Non-Coding RNA Search

Ss1.1-rcov15b_i23.5

Sequence:


               
               CGGATTGGCACATCCAGAAGTTCCCTCCCCAGGTCCAGCCCAGGCACTCACCATGTCCAC
CATCTCCCCTGAATCAAGTTTAGAAGACTTTGACTACGATGGGCTTCTAGAAGCCTGTGA
CATGGGAGACATCGTGGCCCTGGGAACTGTCTTCCTATCCATTCTCTACTGCCTTATTTT
TGCCTTTGGCCTCGTGGGCAATCTGCTGGTGGTGTTTGCTCTCACCAATAGCCAGAAGCC
CAAGAACATCACTGACATTTACCTGCTGAACCTGGCCTTGTCTGATCTGCTTTTTGTAGT
CACCTTGCCCTTCTGGACTCATTATCTGATAAACGAGCAAGGCCTTCACAATGCCTTGTG
CAAACTCACCACAGCCTTCTTCTTCATTGGGTTTTTTGGAGGCATATTCTTCATCACCAT
CATCAGCATTGATAGATACATGGCCATCGTCCTGGCCACTAACTCCATGAACAACCGGAC
CGTGACGCAAGGTGTCATCATCAGCCTCAGCGTCTGGGCAGCCGCCATCTTGATGTCCGC
ACCCCAGTTCATGTTCACCAAGCAGAAGGAAAACGAATGTCATGGTGACTACCCTGAGGT
CCTGCAGAAAATCTGGCCTGTACTCCGCAATGTGGAAATAAATTTGCTTGGCTTCCTGCT
CCCCCTGTTCATTATGAGTTACTGTTACCTCAGAATCATGTGGACACTGCTTTCTTGCAA
GAACCACAAGAAAGCTAAAGCCATTAAGCTGATCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGATTGGCACATCCAGAAGTTCCCTCCCCAGGTCCAGCCCAGGCACTCACCATGTCCAC
CATCTCCCCTGAATCAAGTTTAGAAGACTTTGACTACGATGGGCTTCTAGAAGCCTGTGA
CATGGGAGACATCGTGGCCCTGGGAACTGTCTTCCTATCCATTCTCTACTGCCTTATTTT
TGCCTTTGGCCTCGTGGGCAATCTGCTGGTGGTGTTTGCTCTCACCAATAGCCAGAAGCC
CAAGAACATCACTGACATTTACCTGCTGAACCTGGCCTTGTCTGATCTGCTTTTTGTAGT
CACCTTGCCCTTCTGGACTCATTATCTGATAAACGAGCAAGGCCTTCACAATGCCTTGTG
CAAACTCACCACAGCCTTCTTCTTCATTGGGTTTTTTGGAGGCATATTCTTCATCACCAT
CATCAGCATTGATAGATACATGGCCATCGTCCTGGCCACTAACTCCATGAACAACCGGAC
CGTGACGCAAGGTGTCATCATCAGCCTCAGCGTCTGGGCAGCCGCCATCTTGATGTCCGC
ACCCCAGTTCATGTTCACCAAGCAGAAGGAAAACGAATGTCATGGTGACTACCCTGAGGT
CCTGCAGAAAATCTGGCCTGTACTCCGCAATGTGGAAATAAATTTGCTTGGCTTCCTGCT
CCCCCTGTTCATTATGAGTTACTGTTACCTCAGAATCATGTGGACACTGCTTTCTTGCAA
GAACCACAAGAAAGCTAAAGCCATTAAGCTGATCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13027669|gb|AAK08627.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13027669|gb|AAK08627.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               200-654, - strand, RNAz p=0.969379
               

               
               351-469, - strand, RNAz p=0.562294
               

               
               440-559, + strand, RNAz p=0.510651

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-654, - strand, RNAz p=0.969379
               

               
               351-469, - strand, RNAz p=0.562294
               

               
               440-559, + strand, RNAz p=0.510651

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               40-756, gnl|bosTau2|chr22 (11379071-11378355)
               

               
               40-756, gnl|Hg17|chr3 (39283017-39282304)
               

               
               40-756, gnl|Mm7|chr9 (119748242-119747526)
               


               
               152-754, gnl|bosTau2|chr19 (34059281-34059898)
               

               
               152-754, gnl|Hg17|chr17 (35965479-35964862)
               

               
               152-754, gnl|Mm7|chr11 (99254956-99254339)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-756, gnl|bosTau2|chr22 (11379071-11378355)
               

               
               40-756, gnl|Hg17|chr3 (39283017-39282304)
               

               
               40-756, gnl|Mm7|chr9 (119748242-119747526)
               


               
               152-754, gnl|bosTau2|chr19 (34059281-34059898)
               

               
               152-754, gnl|Hg17|chr17 (35965479-35964862)
               

               
               152-754, gnl|Mm7|chr11 (99254956-99254339)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.132153)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               clu (0.119646)

	200-654, - strand, RNAz p=0.969379
	351-469, - strand, RNAz p=0.562294
	440-559, + strand, RNAz p=0.510651

	40-756, gnl\|bosTau2\|chr22 (11379071-11378355)
	40-756, gnl\|Hg17\|chr3 (39283017-39282304)
	40-756, gnl\|Mm7\|chr9 (119748242-119747526)

	152-754, gnl\|bosTau2\|chr19 (34059281-34059898)
	152-754, gnl\|Hg17\|chr17 (35965479-35964862)
	152-754, gnl\|Mm7\|chr11 (99254956-99254339)