Non-Coding RNA Search

Ss1.1-rcov16b_e7.5

Sequence:


               
               GCCGGGGGCGGGGTGGGGGTGGGGGGACCTTGGCCACGCGTGTCCAGGCGCCCGCGAGGG
TTCTCCCTCCTCCTGTGACTCCTGGTCTGCGGGGAGGCCCGTCCAGTCTCTCCCCTCGGC
CAGGAGGTGCCCCCAGGGGGGACCCGCCACAGGGCTCCGGGCTTGGCCGGGACGCCCGCC
GTCTCGAACGCGTCCAGGTGGCTGTGCTGCCCGGGTGCAGAGGAGAGATGTGGGGTTGAC
TGAGGGGCCTCCGAAGCTCCCGATCTTCCCGCGATTGTACCTGAAAGCTGCTGTCTCTCG
TTTTATTAATTTGGGGGTGGGGTGCTGGCTCGCCATGGGCGTGGAGCAGATTTACCTCGT
TCTGTGCTGATTGAGCGAAAGCGTTATTTATTTGTTTTGACGCAAGTGCTTTCGGTGTTT
TCTCCTAGCTGATGGCTTCTTCAAGGTAATAAAACCTTTCCAACCTAATTGGTCAGATGA
GACGTTTCCTTGTGTGCTTAAATAAAGCAATTAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGGGGCGGGGTGGGGGTGGGGGGACCTTGGCCACGCGTGTCCAGGCGCCCGCGAGGG
TTCTCCCTCCTCCTGTGACTCCTGGTCTGCGGGGAGGCCCGTCCAGTCTCTCCCCTCGGC
CAGGAGGTGCCCCCAGGGGGGACCCGCCACAGGGCTCCGGGCTTGGCCGGGACGCCCGCC
GTCTCGAACGCGTCCAGGTGGCTGTGCTGCCCGGGTGCAGAGGAGAGATGTGGGGTTGAC
TGAGGGGCCTCCGAAGCTCCCGATCTTCCCGCGATTGTACCTGAAAGCTGCTGTCTCTCG
TTTTATTAATTTGGGGGTGGGGTGCTGGCTCGCCATGGGCGTGGAGCAGATTTACCTCGT
TCTGTGCTGATTGAGCGAAAGCGTTATTTATTTGTTTTGACGCAAGTGCTTTCGGTGTTT
TCTCCTAGCTGATGGCTTCTTCAAGGTAATAAAACCTTTCCAACCTAATTGGTCAGATGA
GACGTTTCCTTGTGTGCTTAAATAAAGCAATTAGTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               200-516, gnl|bosTau2|chr13 (38114625-38114281)
               

               
               200-516, gnl|Hg17|chr20 (56687507-56687860)
               

               
               200-516, gnl|Mm7|chr2 (173843700-173844041)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               200-516, gnl|bosTau2|chr13 (38114625-38114281)
               

               
               200-516, gnl|Hg17|chr20 (56687507-56687860)
               

               
               200-516, gnl|Mm7|chr2 (173843700-173844041)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               che (0.272628)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               eje (0.0988338)

	200-516, gnl\|bosTau2\|chr13 (38114625-38114281)
	200-516, gnl\|Hg17\|chr20 (56687507-56687860)
	200-516, gnl\|Mm7\|chr2 (173843700-173844041)

	che (0.272628)
	fli (0.202881)
	nbm (0.198649)
	fcc (0.197785)
	col (0.195008)
	gul (0.177588)
	ill (0.175593)
	fbs (0.175346)
	cje (0.165235)
	hlv (0.139256)
	cov (0.132153)
	eje (0.0988338)