Non-Coding RNA Search

Ss1.1-rcov18b_g12.5

Sequence:


               
               ATTGACTCCGGTATTGGGTTCAGGTTGGGGCACCTCCGGAGAGATGGTCAAAGCTCCTGC
CCCTTCTCCCAGCAGGGCTCTGAGATTCCAGCCATGGCCATTCCTTCAACTCCTTCCAGG
AAAAGGCTGCCTTTCCCAACTCCTCTGCCCTCTGGGCCAGATTCCACTACAGAGTTACTC
CAGGAATGTCATGAGGCGCCCAAGACTTGGGGCTCCTGCTCAGCCCCACTTCTGGGGGGT
GGGATATGGCTGTGCAGTAAGTGATCCTGAAACATGCCCAGCCAGAGATGCTCCCCTTGT
ATGCCAGACCCCTGCGTCACCGCCAACCTAGAAAAAGAAAGGCACGATGGTGTGGGAGGG
AGCTGGGAGGAGGCTGGCAGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGACTCCGGTATTGGGTTCAGGTTGGGGCACCTCCGGAGAGATGGTCAAAGCTCCTGC
CCCTTCTCCCAGCAGGGCTCTGAGATTCCAGCCATGGCCATTCCTTCAACTCCTTCCAGG
AAAAGGCTGCCTTTCCCAACTCCTCTGCCCTCTGGGCCAGATTCCACTACAGAGTTACTC
CAGGAATGTCATGAGGCGCCCAAGACTTGGGGCTCCTGCTCAGCCCCACTTCTGGGGGGT
GGGATATGGCTGTGCAGTAAGTGATCCTGAAACATGCCCAGCCAGAGATGCTCCCCTTGT
ATGCCAGACCCCTGCGTCACCGCCAACCTAGAAAAAGAAAGGCACGATGGTGTGGGAGGG
AGCTGGGAGGAGGCTGGCAGCTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, + strand, RNAz p=0.997676

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.997676

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-384, gnl|bosTau2|chr19 (34215494-34215085)
               

               
               1-384, gnl|Hg17|chr17 (35869736-35870118)
               

               
               1-384, gnl|Mm7|chr11 (99164248-99164603)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-384, gnl|bosTau2|chr19 (34215494-34215085)
               

               
               1-384, gnl|Hg17|chr17 (35869736-35870118)
               

               
               1-384, gnl|Mm7|chr11 (99164248-99164603)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cov (0.396458)
               

               
               cli (0.152812)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               cli (0.152812)
               

               
               clu (0.119646)

	1-384, gnl\|bosTau2\|chr19 (34215494-34215085)
	1-384, gnl\|Hg17\|chr17 (35869736-35870118)
	1-384, gnl\|Mm7\|chr11 (99164248-99164603)