Ss1.1-rcov18b_o22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGCCTCTCTCTACCCTGTAGCCTTCAGCAGCCACCTAGTGCCCAAGCTTGCCAAAGAG CTGTGCATAGAGGAGTCAGATATGGCTAGAGGGGATGGGCCCACCAAATGCTCCCAGCAT CTGCGCTGCCTACAAGCCTTGTCAGCTATTTCAACACACCCCAGCATTGTCCAGGAGACC CTGCCTCTTCTACTGCAGCATCTCCGCCAGATGAACAAAGGGAATATGGCTGCAGGAACC AGTGAAATTATTGCTGTCTGTCAGAGCCTCCAGCAGGTGGCAGAAAAATGCCAGCGAGAC CCTGAGAGCTGCTGGTATTTCCATCAGACAGCTATACCTTGCCTGCTTTCCTTGGCTGTG CAGGCTTCCATGCCAGAGAAGGAACACTCAGTTCTGAAAAAAGTGCTGTTGGAGGATGAG GTCTTGGCTGCCATGGTGTCTGTCATTGGGACGGCCACCACCCACTTGAGCCCTGACTTA GCTGCCCGGAGTGTCGCCCACATCGTGCCCCTCTTCTTGGATGGCAACATCTCCTTCCTG CCTGAAAACAGCTTCCCTGGCAGATTCCGGCCATTTCAGGATGGCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGCCTCTCTCTACCCTGTAGCCTTCAGCAGCCACCTAGTGCCCAAGCTTGCCAAAGAG CTGTGCATAGAGGAGTCAGATATGGCTAGAGGGGATGGGCCCACCAAATGCTCCCAGCAT CTGCGCTGCCTACAAGCCTTGTCAGCTATTTCAACACACCCCAGCATTGTCCAGGAGACC CTGCCTCTTCTACTGCAGCATCTCCGCCAGATGAACAAAGGGAATATGGCTGCAGGAACC AGTGAAATTATTGCTGTCTGTCAGAGCCTCCAGCAGGTGGCAGAAAAATGCCAGCGAGAC CCTGAGAGCTGCTGGTATTTCCATCAGACAGCTATACCTTGCCTGCTTTCCTTGGCTGTG CAGGCTTCCATGCCAGAGAAGGAACACTCAGTTCTGAAAAAAGTGCTGTTGGAGGATGAG GTCTTGGCTGCCATGGTGTCTGTCATTGGGACGGCCACCACCCACTTGAGCCCTGACTTA GCTGCCCGGAGTGTCGCCCACATCGTGCCCCTCTTCTTGGATGGCAACATCTCCTTCCTG CCTGAAAACAGCTTCCCTGGCAGATTCCGGCCATTTCAGGATGGCTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 215-370, - strand, RNAz p=0.975908 | |
| 250-369, - strand, RNAz p=0.987328 | |
| 471-580, - strand, RNAz p=0.886966 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 215-370, - strand, RNAz p=0.975908 | |
| 250-369, - strand, RNAz p=0.987328 | |
| 471-580, - strand, RNAz p=0.886966 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 215-376, gnl|bosTau2|chr26 (10614555-10614716) | |
| 215-376, gnl|canFam2|chr28 (13751945-13752128) | |
| 215-376, gnl|dasNov1|scaffold_11390 (39395-39576) | |
| 215-376, gnl|echTel1|scaffold_319824 (56290-56455) | |
| 215-376, gnl|fr1|chrUn (30150960-30150823) | |
| 215-376, gnl|galGal2|chr6 (21464134-21463961) | |
| 215-376, gnl|hg17|chr10 (99213591-99213765) | |
| 215-376, gnl|Hg17|chr10 (99213765-99213605) | |
| 215-376, gnl|loxAfr1|scaffold_4202 (86801-86619) | |
| 215-376, gnl|mm7|chr19 (41846235-41846406) | |
| 215-376, gnl|Mm7|chr19 (41846412-41846246) | |
| 215-376, gnl|monDom2|scaffold_14 (24976955-24976780) | |
| 215-376, gnl|oryCun1|scaffold_192560 (5646-5820) | |
| 215-376, gnl|panTro1|chr8 (100950516-100950690) | |
| 215-376, gnl|tetNig1|chr2 (3043288-3043164) | |
| 471-580, gnl|bosTau2|chr26 (10616336-10616445) | |
| 471-580, gnl|canFam2|chr28 (13750378-13750494) | |
| 471-580, gnl|danRer3|chr17 (33268735-33268626) | |
| 471-580, gnl|dasNov1|scaffold_11390 (37920-38035) | |
| 471-580, gnl|echTel1|scaffold_319824 (54223-54339) | |
| 471-580, gnl|fr1|chrUn (30151502-30151387) | |
| 471-580, gnl|galGal2|chr6 (21464692-21464577) | |
| 471-580, gnl|hg17|chr10 (99211761-99211876) | |
| 471-580, gnl|Hg17|chr10 (99211872-99211763) | |
| 471-580, gnl|loxAfr1|scaffold_4202 (88930-88815) | |
| 471-580, gnl|mm7|chr19 (41843817-41843932) | |
| 471-580, gnl|Mm7|chr19 (41843928-41843819) | |
| 471-580, gnl|monDom2|scaffold_14 (24978949-24978834) | |
| 471-580, gnl|oryCun1|scaffold_192560 (3543-3657) | |
| 471-580, gnl|panTro1|chr8 (100948680-100948795) | |
| 471-580, gnl|rheMac2|chr9 (97052422-97052537) | |
| 471-580, gnl|tetNig1|chr2 (3043765-3043651) | |
| 471-580, gnl|xenTro1|scaffold_51 (596068-596182) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 215-376, gnl|bosTau2|chr26 (10614555-10614716) | |
| 215-376, gnl|canFam2|chr28 (13751945-13752128) | |
| 215-376, gnl|dasNov1|scaffold_11390 (39395-39576) | |
| 215-376, gnl|echTel1|scaffold_319824 (56290-56455) | |
| 215-376, gnl|fr1|chrUn (30150960-30150823) | |
| 215-376, gnl|galGal2|chr6 (21464134-21463961) | |
| 215-376, gnl|hg17|chr10 (99213591-99213765) | |
| 215-376, gnl|Hg17|chr10 (99213765-99213605) | |
| 215-376, gnl|loxAfr1|scaffold_4202 (86801-86619) | |
| 215-376, gnl|mm7|chr19 (41846235-41846406) | |
| 215-376, gnl|Mm7|chr19 (41846412-41846246) | |
| 215-376, gnl|monDom2|scaffold_14 (24976955-24976780) | |
| 215-376, gnl|oryCun1|scaffold_192560 (5646-5820) | |
| 215-376, gnl|panTro1|chr8 (100950516-100950690) | |
| 215-376, gnl|tetNig1|chr2 (3043288-3043164) | |
| 471-580, gnl|bosTau2|chr26 (10616336-10616445) | |
| 471-580, gnl|canFam2|chr28 (13750378-13750494) | |
| 471-580, gnl|danRer3|chr17 (33268735-33268626) | |
| 471-580, gnl|dasNov1|scaffold_11390 (37920-38035) | |
| 471-580, gnl|echTel1|scaffold_319824 (54223-54339) | |
| 471-580, gnl|fr1|chrUn (30151502-30151387) | |
| 471-580, gnl|galGal2|chr6 (21464692-21464577) | |
| 471-580, gnl|hg17|chr10 (99211761-99211876) | |
| 471-580, gnl|Hg17|chr10 (99211872-99211763) | |
| 471-580, gnl|loxAfr1|scaffold_4202 (88930-88815) | |
| 471-580, gnl|mm7|chr19 (41843817-41843932) | |
| 471-580, gnl|Mm7|chr19 (41843928-41843819) | |
| 471-580, gnl|monDom2|scaffold_14 (24978949-24978834) | |
| 471-580, gnl|oryCun1|scaffold_192560 (3543-3657) | |
| 471-580, gnl|panTro1|chr8 (100948680-100948795) | |
| 471-580, gnl|rheMac2|chr9 (97052422-97052537) | |
| 471-580, gnl|tetNig1|chr2 (3043765-3043651) | |
| 471-580, gnl|xenTro1|scaffold_51 (596068-596182) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| cov (0.132153) | |
| eep (0.122564) |