Ss1.1-rcov19b_f21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAGCCACCCTGGCAACAAGAGCCCCGTCTCTCAGCTCGACTGTCTGAACAGGGATAACT ACATCCGTTCCTGCCGATTGCTCCCTGATGGGCGCACCCTAATAGTGGGAGGGGAAGCCA GTACTCTGTCCATTTGGGACCTGGCGGCTCCCACCCCGCGCATCAAGGCAGAGCTGACGT CTTCAGCCCCTGCCTGCTATGCCCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCCT GCTGCAGCGACGGCAACATCGCCGTGTGGGACCTCCACAACCAGACACTGGTGAGGCAAT TCCAGGGCCACACGGACGGGGCCAGCTGTATTGACATTTCTAATGATGGCACCAAGCTCT GGACAGGCGGCTTGGACAACACAGTCCGGTCCTGGGACCTGCGTGAAGGGCGGCAGCTGC AGCAGCATGACTTCACTTCCCAGATCTTTTCTCTGGGCTACTGCCCAACCGGAGAGTGGC TGGCGGTGGGCATGGAGAACAGCAATGTGGAAGTGCTGCACGTCACCAAGCCCGACAAGT ACCAGCTTCATCTCCACGAGAGCTGTGTGTTGTCCCTCAAGTTTGCCCATTGTGGCAAAT GGTTTGTAAGCACGGGAAAGGACAACCTTCTGAATGCCTGGAGAACACCTTACGGGGCCA GTATATTCCAGTCCAAAGAATCCTCATCGGTGCTCAGCTGTGACATTTCTGTGGATGACA AATACATTGTCACTGGCTCTGGAGATAAGAAGGCCACGGTTTATGAAGTTATTTATTAAG GACAAATCTTCATGCGAACTGGACTCCTTCTCCTTGTAGCACTTTGTTCTATCATCCTTC TGTTCCCCCGCATCTAAAACCAAGGATATCCAATAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAGCCACCCTGGCAACAAGAGCCCCGTCTCTCAGCTCGACTGTCTGAACAGGGATAACT ACATCCGTTCCTGCCGATTGCTCCCTGATGGGCGCACCCTAATAGTGGGAGGGGAAGCCA GTACTCTGTCCATTTGGGACCTGGCGGCTCCCACCCCGCGCATCAAGGCAGAGCTGACGT CTTCAGCCCCTGCCTGCTATGCCCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCCT GCTGCAGCGACGGCAACATCGCCGTGTGGGACCTCCACAACCAGACACTGGTGAGGCAAT TCCAGGGCCACACGGACGGGGCCAGCTGTATTGACATTTCTAATGATGGCACCAAGCTCT GGACAGGCGGCTTGGACAACACAGTCCGGTCCTGGGACCTGCGTGAAGGGCGGCAGCTGC AGCAGCATGACTTCACTTCCCAGATCTTTTCTCTGGGCTACTGCCCAACCGGAGAGTGGC TGGCGGTGGGCATGGAGAACAGCAATGTGGAAGTGCTGCACGTCACCAAGCCCGACAAGT ACCAGCTTCATCTCCACGAGAGCTGTGTGTTGTCCCTCAAGTTTGCCCATTGTGGCAAAT GGTTTGTAAGCACGGGAAAGGACAACCTTCTGAATGCCTGGAGAACACCTTACGGGGCCA GTATATTCCAGTCCAAAGAATCCTCATCGGTGCTCAGCTGTGACATTTCTGTGGATGACA AATACATTGTCACTGGCTCTGGAGATAAGAAGGCCACGGTTTATGAAGTTATTTATTAAG GACAAATCTTCATGCGAACTGGACTCCTTCTCCTTGTAGCACTTTGTTCTATCATCCTTC TGTTCCCCCGCATCTAAAACCAAGGATATCCAATAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 87-561, + strand, RNAz p=0.766515 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 87-561, + strand, RNAz p=0.766515 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 47-296, gnl|bosTau2|chr13 (35559978-35559729) | |
| 47-296, gnl|Hg17|chr9 (81435522-81435273) | |
| 47-296, gnl|Mm7|chr4 (71558718-71558469) | |
| 442-595, gnl|bosTau2|chr13 (35555094-35554941) | |
| 442-595, gnl|canFam2|chr1 (80699349-80699135) | |
| 442-595, gnl|danRer3|chr7 (26511112-26510944) | |
| 442-595, gnl|dasNov1|scaffold_18531 (1109-895) | |
| 442-595, gnl|echTel1|scaffold_321634 (9089-8883) | |
| 442-595, gnl|fr1|chrUn (122331860-122331691) | |
| 442-595, gnl|galGal2|chrZ_random (11888468-11888683) | |
| 442-595, gnl|hg17|chr9 (81429949-81430163) | |
| 442-595, gnl|Hg17|chr9 (81430126-81429973) | |
| 442-595, gnl|loxAfr1|scaffold_3786 (77273-77061) | |
| 442-595, gnl|mm7|chr4 (71553820-71554027) | |
| 442-595, gnl|Mm7|chr4 (71553990-71553837) | |
| 442-595, gnl|monDom2|scaffold_17 (53942496-53942282) | |
| 442-595, gnl|oryCun1|scaffold_213054 (46557-46771) | |
| 442-595, gnl|panTro1|chr11 (65356622-65356836) | |
| 442-595, gnl|rheMac2|chr15 (90344336-90344550) | |
| 442-595, gnl|rn3|chr5 (89690093-89690300) | |
| 442-595, gnl|tetNig1|chr12 (7759228-7759402) | |
| 442-595, gnl|xenTro1|scaffold_1184 (86357-86570) | |
| 666-784, gnl|bosTau2|chr13 (35553849-35553731) | |
| 666-784, gnl|canFam2|chr1 (80700584-80700440) | |
| 666-784, gnl|danRer3|chr7 (26513225-26513101) | |
| 666-784, gnl|dasNov1|scaffold_18531 (2359-2215) | |
| 666-784, gnl|echTel1|scaffold_321634 (10660-10517) | |
| 666-784, gnl|fr1|chrUn (122332333-122332189) | |
| 666-784, gnl|galGal2|chrZ_random (11887710-11887850) | |
| 666-784, gnl|hg17|chr9 (81428664-81428808) | |
| 666-784, gnl|Hg17|chr9 (81428780-81428662) | |
| 666-784, gnl|loxAfr1|scaffold_3786 (78961-78817) | |
| 666-784, gnl|mm7|chr4 (71551979-71552126) | |
| 666-784, gnl|Mm7|chr4 (71552095-71551977) | |
| 666-784, gnl|monDom2|scaffold_17 (53943726-53943586) | |
| 666-784, gnl|oryCun1|scaffold_213054 (45404-45548) | |
| 666-784, gnl|panTro1|chr11 (65355345-65355489) | |
| 666-784, gnl|rheMac2|chr15 (90343053-90343197) | |
| 666-784, gnl|rn3|chr5 (89688416-89688563) | |
| 666-784, gnl|tetNig1|chr12 (7758657-7758790) | |
| 666-784, gnl|xenTro1|scaffold_1184 (83315-83459) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-296, gnl|bosTau2|chr13 (35559978-35559729) | |
| 47-296, gnl|Hg17|chr9 (81435522-81435273) | |
| 47-296, gnl|Mm7|chr4 (71558718-71558469) | |
| 442-595, gnl|bosTau2|chr13 (35555094-35554941) | |
| 442-595, gnl|canFam2|chr1 (80699349-80699135) | |
| 442-595, gnl|danRer3|chr7 (26511112-26510944) | |
| 442-595, gnl|dasNov1|scaffold_18531 (1109-895) | |
| 442-595, gnl|echTel1|scaffold_321634 (9089-8883) | |
| 442-595, gnl|fr1|chrUn (122331860-122331691) | |
| 442-595, gnl|galGal2|chrZ_random (11888468-11888683) | |
| 442-595, gnl|hg17|chr9 (81429949-81430163) | |
| 442-595, gnl|Hg17|chr9 (81430126-81429973) | |
| 442-595, gnl|loxAfr1|scaffold_3786 (77273-77061) | |
| 442-595, gnl|mm7|chr4 (71553820-71554027) | |
| 442-595, gnl|Mm7|chr4 (71553990-71553837) | |
| 442-595, gnl|monDom2|scaffold_17 (53942496-53942282) | |
| 442-595, gnl|oryCun1|scaffold_213054 (46557-46771) | |
| 442-595, gnl|panTro1|chr11 (65356622-65356836) | |
| 442-595, gnl|rheMac2|chr15 (90344336-90344550) | |
| 442-595, gnl|rn3|chr5 (89690093-89690300) | |
| 442-595, gnl|tetNig1|chr12 (7759228-7759402) | |
| 442-595, gnl|xenTro1|scaffold_1184 (86357-86570) | |
| 666-784, gnl|bosTau2|chr13 (35553849-35553731) | |
| 666-784, gnl|canFam2|chr1 (80700584-80700440) | |
| 666-784, gnl|danRer3|chr7 (26513225-26513101) | |
| 666-784, gnl|dasNov1|scaffold_18531 (2359-2215) | |
| 666-784, gnl|echTel1|scaffold_321634 (10660-10517) | |
| 666-784, gnl|fr1|chrUn (122332333-122332189) | |
| 666-784, gnl|galGal2|chrZ_random (11887710-11887850) | |
| 666-784, gnl|hg17|chr9 (81428664-81428808) | |
| 666-784, gnl|Hg17|chr9 (81428780-81428662) | |
| 666-784, gnl|loxAfr1|scaffold_3786 (78961-78817) | |
| 666-784, gnl|mm7|chr4 (71551979-71552126) | |
| 666-784, gnl|Mm7|chr4 (71552095-71551977) | |
| 666-784, gnl|monDom2|scaffold_17 (53943726-53943586) | |
| 666-784, gnl|oryCun1|scaffold_213054 (45404-45548) | |
| 666-784, gnl|panTro1|chr11 (65355345-65355489) | |
| 666-784, gnl|rheMac2|chr15 (90343053-90343197) | |
| 666-784, gnl|rn3|chr5 (89688416-89688563) | |
| 666-784, gnl|tetNig1|chr12 (7758657-7758790) | |
| 666-784, gnl|xenTro1|scaffold_1184 (83315-83459) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| csp (0.322373) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| sin (0.174948) | |
| spl (0.143184) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ldo (0.0970026) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.322373) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| sin (0.174948) | |
| spl (0.143184) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ldo (0.0970026) |