Non-Coding RNA Search

Ss1.1-rcov20b_c18.5

Sequence:


               
               GGACCCCAGCCCCACTTCTCCCAACAGGCAGGTCGCACTTTGCCCCTAGTTATTGGGACC
AGGCAGGGGAGGGGGCCTGAGGACCTGGAGGTCAGACACAGAGAGCTCCCAGGGGGTTGG
CCAAGATCTCAGCTGGGGGAGAGATCTCTGGGGTGGGGTCAGGGGAGGAGTAGCCAGGGT
GGCTTCTGGGTCACTCAGGAGGCAGTGACCAGCCTGTGAGGCATCAAGGAGGAGGAGGCC
AAGTGGGGGCAGTGACCCCGGAGGACCTGGCCCCTAGTGGGAGAGGGGGAGCTCCAAGGG
TGGAGTGGGGACTCGGCCCCAGATCTGTGTGAAACATTCTTCTGTGTCGCTGTGGGAAAT
CCCTCCCAGCCGTCTTGCCCCGTGTAGCTCTGCGTGTGTCCCATGTCCATGCGTGTATTG
AGAGCCCGTCAGCAGGGCGTGCATGACTCTTTGGCAACATGTGTTATCTTGGAGCCACGT
GTTTTTATTGCTGACTTTAAATATTTATTCCACGGCAGACAGAGACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCCCAGCCCCACTTCTCCCAACAGGCAGGTCGCACTTTGCCCCTAGTTATTGGGACC
AGGCAGGGGAGGGGGCCTGAGGACCTGGAGGTCAGACACAGAGAGCTCCCAGGGGGTTGG
CCAAGATCTCAGCTGGGGGAGAGATCTCTGGGGTGGGGTCAGGGGAGGAGTAGCCAGGGT
GGCTTCTGGGTCACTCAGGAGGCAGTGACCAGCCTGTGAGGCATCAAGGAGGAGGAGGCC
AAGTGGGGGCAGTGACCCCGGAGGACCTGGCCCCTAGTGGGAGAGGGGGAGCTCCAAGGG
TGGAGTGGGGACTCGGCCCCAGATCTGTGTGAAACATTCTTCTGTGTCGCTGTGGGAAAT
CCCTCCCAGCCGTCTTGCCCCGTGTAGCTCTGCGTGTGTCCCATGTCCATGCGTGTATTG
AGAGCCCGTCAGCAGGGCGTGCATGACTCTTTGGCAACATGTGTTATCTTGGAGCCACGT
GTTTTTATTGCTGACTTTAAATATTTATTCCACGGCAGACAGAGACAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               223-338, + strand, RNAz p=0.655905

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-338, + strand, RNAz p=0.655905

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC064807, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC064807, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-528, gnl|bosTau2|chr29 (18154995-18155538)
               

               
               1-528, gnl|Hg17|chr11 (18706605-18706122)
               

               
               1-528, gnl|Mm7|chr7 (43254529-43254046)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-528, gnl|bosTau2|chr29 (18154995-18155538)
               

               
               1-528, gnl|Hg17|chr11 (18706605-18706122)
               

               
               1-528, gnl|Mm7|chr7 (43254529-43254046)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.264306)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               ebs (0.118301)

	1-528, gnl\|bosTau2\|chr29 (18154995-18155538)
	1-528, gnl\|Hg17\|chr11 (18706605-18706122)
	1-528, gnl\|Mm7\|chr7 (43254529-43254046)