Non-Coding RNA Search

Ss1.1-rcov21b_o1.5

Sequence:


               
               GAACACTTCCTGCTCTCCATCCCTGGCCGCTGCTGCTAATTACCAATTCTTAGGTCTGTG
GAGTGAGTTTGAAAACCCTGTCCTGACTACCGGGTTCGTTCGACTCTCACCACACCCCAG
TTAGGTCCCCGGGGCAGGGGTTCTCAACCCCGTGTTACAGATGACACTGAGACCCAGACA
GGTGAAGTGACTTGCCCAAGGTGACACAAGTAGCAAAAGGCAAAGGGAAGCAAGAACCCA
GGCTGCTTGTTCTGAGCCTCCGTGCTCTCTCCTTCCGACTCCCCTGCCCGCTCTTGAAAG
CAGAGTTCCTGGCCTACGCGCCCTGGCCTTGTGTGGCCAACTGGGCCTTAGACTAGAACC
AGAGCCCAGGACTGAGCCAGTGCCGGGCTCAGCCACTCCTCCGCTTGACCACAAGGCAGG
GCTCTGAATGAGCTGCTGAGGCAGGGTAGGACCCCTTCGTCTCTGGACTGTCTGCTTACA
AACGGGCATCCTAGGAACCAGATAAGCAGGCCTGGGTCTCGTGGAAGAAAGGCCAGGAGC
TAGGGCTCTAGGAGTTTGGGAATCAGCCAGAGCGGCCTAAAGAGCCACCAGGCGTATCCT
ACTGGGACATTAGCCCTGGCCCCACAGCCAGCGTTGGTGCCTGTGTTCCAAGTAGCTAGA
GAAAAGCTACAGCTGCAACCAGGAGCACCTCTCCCAGATGTGCCCACCTACCTACCTTCC
GGCAGGTGGAGGTGAAACCCTGGGTACCACGGGGGCGGAGCTGGGACGGTGACCCAACAG
CATCAAGGAGTGGGTGAGGGGTCTCTCCCCTGGATGCCGCCCCTTCTTTGGGGAAGGTGG
CCAAACGGCCTGGCAGAGCGTGGCCGCCTGCTCGGTCTCCAGCCGGGTCTTTCCCAGGGA
ACTGGAAGGTCAGTGTTGCTTCCCCCTCAGCCCCTCCCACTGCAGGCAGCCTTTCTGCTT
CCCCAATGCCTTATGCCTGGGCACACTGCCACAGAATATGCAATAGGCGTGGGTGCCTTG
CCCCCACGCCCACACCCTCACCCCGGGCAGCCCCTGGACCCCAAAGGCCGCAGCTGCCAC
GGCCTCCCTTCAGCCCCTCCTTGCCTATCTGTCTTCACACTGAGAATGGCGCCTAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACACTTCCTGCTCTCCATCCCTGGCCGCTGCTGCTAATTACCAATTCTTAGGTCTGTG
GAGTGAGTTTGAAAACCCTGTCCTGACTACCGGGTTCGTTCGACTCTCACCACACCCCAG
TTAGGTCCCCGGGGCAGGGGTTCTCAACCCCGTGTTACAGATGACACTGAGACCCAGACA
GGTGAAGTGACTTGCCCAAGGTGACACAAGTAGCAAAAGGCAAAGGGAAGCAAGAACCCA
GGCTGCTTGTTCTGAGCCTCCGTGCTCTCTCCTTCCGACTCCCCTGCCCGCTCTTGAAAG
CAGAGTTCCTGGCCTACGCGCCCTGGCCTTGTGTGGCCAACTGGGCCTTAGACTAGAACC
AGAGCCCAGGACTGAGCCAGTGCCGGGCTCAGCCACTCCTCCGCTTGACCACAAGGCAGG
GCTCTGAATGAGCTGCTGAGGCAGGGTAGGACCCCTTCGTCTCTGGACTGTCTGCTTACA
AACGGGCATCCTAGGAACCAGATAAGCAGGCCTGGGTCTCGTGGAAGAAAGGCCAGGAGC
TAGGGCTCTAGGAGTTTGGGAATCAGCCAGAGCGGCCTAAAGAGCCACCAGGCGTATCCT
ACTGGGACATTAGCCCTGGCCCCACAGCCAGCGTTGGTGCCTGTGTTCCAAGTAGCTAGA
GAAAAGCTACAGCTGCAACCAGGAGCACCTCTCCCAGATGTGCCCACCTACCTACCTTCC
GGCAGGTGGAGGTGAAACCCTGGGTACCACGGGGGCGGAGCTGGGACGGTGACCCAACAG
CATCAAGGAGTGGGTGAGGGGTCTCTCCCCTGGATGCCGCCCCTTCTTTGGGGAAGGTGG
CCAAACGGCCTGGCAGAGCGTGGCCGCCTGCTCGGTCTCCAGCCGGGTCTTTCCCAGGGA
ACTGGAAGGTCAGTGTTGCTTCCCCCTCAGCCCCTCCCACTGCAGGCAGCCTTTCTGCTT
CCCCAATGCCTTATGCCTGGGCACACTGCCACAGAATATGCAATAGGCGTGGGTGCCTTG
CCCCCACGCCCACACCCTCACCCCGGGCAGCCCCTGGACCCCAAAGGCCGCAGCTGCCAC
GGCCTCCCTTCAGCCCCTCCTTGCCTATCTGTCTTCACACTGAGAATGGCGCCTAATAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               943-1140, - strand, RNAz p=0.987195

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               943-1140, - strand, RNAz p=0.987195

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               989-1054, - strand, RNAmicro p=0.921279

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               989-1054, - strand, RNAmicro p=0.921279

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-707, gnl|bosTau2|chr11 (55164731-55165455)
               


               
               829-1140, gnl|bosTau2|chr11 (55165971-55166274)
               

               
               829-1140, gnl|Hg17|chr2 (26865385-26865697)
               

               
               829-1140, gnl|Mm7|chr5 (29657464-29657767)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-707, gnl|bosTau2|chr11 (55164731-55165455)
               


               
               829-1140, gnl|bosTau2|chr11 (55165971-55166274)
               

               
               829-1140, gnl|Hg17|chr2 (26865385-26865697)
               

               
               829-1140, gnl|Mm7|chr5 (29657464-29657767)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.660764)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.660764)

	1-707, gnl\|bosTau2\|chr11 (55164731-55165455)

	829-1140, gnl\|bosTau2\|chr11 (55165971-55166274)
	829-1140, gnl\|Hg17\|chr2 (26865385-26865697)
	829-1140, gnl\|Mm7\|chr5 (29657464-29657767)