Ss1.1-rcov22b_n7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCGCGAGCGCGGCGCCCAGGAAGATAGCAGAGGCTCGAGCGAGCTTCTCCCGACCGAC CTTTCTGCAGCTGAGCCCTGGGGGTCTGCGACGCGCGGGACCAGGGGACTGAGGCAGGAA GCAAAGCCCCCCGGACACCGGCCGTCGCCTGCCTTGGAGCACGGGCTACGCCGAGGTCAT CAACGCTGGCAAGAGCCGACACAATGAGGACCAGGCTTGCTGTGAGGTGGTGTACGTGGA AGGTCGGAGGAGCGTTTCAGGGGCACCCAGAGAGCCTAGCCGAGGCCAGGGACTCTGCTT CTACTACTGGGGTCTGTTCGATGGGCACGCAGGGGGTGGAGCTGCTGAAATGGCCTCTAG GCTCCTGCACCGCCACATTCGGGAGCAGCTAAAGGACCTGGTAGAGATACTCCAGGACCC CTCACCACCTCCCCTCTGCCTCCCATCCACCCCGGGGGCTCCAGGTTCCTCTGATTCTTC TCACTTGGTTGGTCCTCAGCCCTGCTGGCCTTTGCAGAAGGAAGTGACCCATGAGAGCCT GGTAGTGGGTGCCATTGAGAATGCCTTCCAGCTCATGGATGAGCAAATGGCGAGGGAGCG GCGTGGCCACCAAGTGGAGGGGGGCTGCTGTGCACTGGTTGTGGTCTACTTACTAGGCAA AGTAGCCATCATCGTCCGGAACGGTGAAATCATTCCAATGTCCCAGGAATTCACCCCGGA GACTGAGCGCCAGCGTCTTCAGCTGCTCGGCTTCCTGAAACCAGAGCTGCTGGGTGGTGA ATTCACCCACCTTGAGTTCCCCCGCAGAGTTCAGCCTAAGGAGCTGGGGCAGAGGATGCT GTACCGGGACCAGAACATGACTGGCTGGGCCTACAAAAAGATCGAGCTGGAGGATCTCAG GTTTCCTCTGGTCTGTGGGGAGGGCAAAAAGGCTCGAGTCATGGCCACCATTGGGGTGAC CCGGGGCTTGGGAGACCACAACCTCAGGGTCTGCAGTTCCACCCTGCCCATCAAGCCCTT CCTCTCCTGCTTCCCTGAGGTGCGAGTGTATGACCTGACCCAGTACGAGCACTGCCCAGA TGACGTGCTAGTCCTGGGGACAGACGGGCTGTGGGATGTCACCAGTGACTGTGAGGTAGC TGCCACTGTGGACAAGGTGCTGTCAGCCTATGAGCCCCATGACCCCAGCAGGTACACAGC TCTGGCCCAAGCTCTGGTCCTGGGGGCCCGGGGCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCGCGAGCGCGGCGCCCAGGAAGATAGCAGAGGCTCGAGCGAGCTTCTCCCGACCGAC CTTTCTGCAGCTGAGCCCTGGGGGTCTGCGACGCGCGGGACCAGGGGACTGAGGCAGGAA GCAAAGCCCCCCGGACACCGGCCGTCGCCTGCCTTGGAGCACGGGCTACGCCGAGGTCAT CAACGCTGGCAAGAGCCGACACAATGAGGACCAGGCTTGCTGTGAGGTGGTGTACGTGGA AGGTCGGAGGAGCGTTTCAGGGGCACCCAGAGAGCCTAGCCGAGGCCAGGGACTCTGCTT CTACTACTGGGGTCTGTTCGATGGGCACGCAGGGGGTGGAGCTGCTGAAATGGCCTCTAG GCTCCTGCACCGCCACATTCGGGAGCAGCTAAAGGACCTGGTAGAGATACTCCAGGACCC CTCACCACCTCCCCTCTGCCTCCCATCCACCCCGGGGGCTCCAGGTTCCTCTGATTCTTC TCACTTGGTTGGTCCTCAGCCCTGCTGGCCTTTGCAGAAGGAAGTGACCCATGAGAGCCT GGTAGTGGGTGCCATTGAGAATGCCTTCCAGCTCATGGATGAGCAAATGGCGAGGGAGCG GCGTGGCCACCAAGTGGAGGGGGGCTGCTGTGCACTGGTTGTGGTCTACTTACTAGGCAA AGTAGCCATCATCGTCCGGAACGGTGAAATCATTCCAATGTCCCAGGAATTCACCCCGGA GACTGAGCGCCAGCGTCTTCAGCTGCTCGGCTTCCTGAAACCAGAGCTGCTGGGTGGTGA ATTCACCCACCTTGAGTTCCCCCGCAGAGTTCAGCCTAAGGAGCTGGGGCAGAGGATGCT GTACCGGGACCAGAACATGACTGGCTGGGCCTACAAAAAGATCGAGCTGGAGGATCTCAG GTTTCCTCTGGTCTGTGGGGAGGGCAAAAAGGCTCGAGTCATGGCCACCATTGGGGTGAC CCGGGGCTTGGGAGACCACAACCTCAGGGTCTGCAGTTCCACCCTGCCCATCAAGCCCTT CCTCTCCTGCTTCCCTGAGGTGCGAGTGTATGACCTGACCCAGTACGAGCACTGCCCAGA TGACGTGCTAGTCCTGGGGACAGACGGGCTGTGGGATGTCACCAGTGACTGTGAGGTAGC TGCCACTGTGGACAAGGTGCTGTCAGCCTATGAGCCCCATGACCCCAGCAGGTACACAGC TCTGGCCCAAGCTCTGGTCCTGGGGGCCCGGGGCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 325-444, + strand, RNAz p=0.786319 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 325-444, + strand, RNAz p=0.786319 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-175, gnl|bosTau2|chr3 (27421217-27421043) | |
| 1-175, gnl|canFam2|chr17 (65937083-65936955) | |
| 1-175, gnl|dasNov1|scaffold_41857 (3732-3862) | |
| 1-175, gnl|echTel1|scaffold_277127 (45990-45862) | |
| 1-175, gnl|fr1|chrUn (131256333-131256208) | |
| 1-175, gnl|hg17|chr1 (112969633-112969761) | |
| 1-175, gnl|Hg17|chr1 (112969813-112969639) | |
| 1-175, gnl|mm7|chr3 (104574397-104574269) | |
| 1-175, gnl|Mm7|chr3 (104574215-104574389) | |
| 1-175, gnl|monDom2|scaffold_0 (2558880-2558752) | |
| 1-175, gnl|oryCun1|scaffold_196786 (16366-16494) | |
| 1-175, gnl|panTro1|chr1 (109289356-109289228) | |
| 1-175, gnl|rheMac2|chr1 (115704877-115705005) | |
| 1-175, gnl|rn3|chr2 (200002773-200002645) | |
| 1-175, gnl|tetNig1|chr11 (7589877-7590002) | |
| 286-578, gnl|bosTau2|chr3 (27418866-27418574) | |
| 286-578, gnl|Hg17|chr1 (112967699-112967407) | |
| 286-578, gnl|Mm7|chr3 (104576102-104576394) | |
| 749-868, gnl|bosTau2|chr3 (27417022-27416903) | |
| 749-868, gnl|Hg17|chr1 (112966048-112965929) | |
| 749-868, gnl|Mm7|chr3 (104577613-104577732) | |
| 1038-1194, gnl|bosTau2|chr3 (27416259-27416103) | |
| 1038-1194, gnl|Hg17|chr1 (112965277-112965121) | |
| 1038-1194, gnl|Mm7|chr3 (104578375-104578531) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-175, gnl|bosTau2|chr3 (27421217-27421043) | |
| 1-175, gnl|canFam2|chr17 (65937083-65936955) | |
| 1-175, gnl|dasNov1|scaffold_41857 (3732-3862) | |
| 1-175, gnl|echTel1|scaffold_277127 (45990-45862) | |
| 1-175, gnl|fr1|chrUn (131256333-131256208) | |
| 1-175, gnl|hg17|chr1 (112969633-112969761) | |
| 1-175, gnl|Hg17|chr1 (112969813-112969639) | |
| 1-175, gnl|mm7|chr3 (104574397-104574269) | |
| 1-175, gnl|Mm7|chr3 (104574215-104574389) | |
| 1-175, gnl|monDom2|scaffold_0 (2558880-2558752) | |
| 1-175, gnl|oryCun1|scaffold_196786 (16366-16494) | |
| 1-175, gnl|panTro1|chr1 (109289356-109289228) | |
| 1-175, gnl|rheMac2|chr1 (115704877-115705005) | |
| 1-175, gnl|rn3|chr2 (200002773-200002645) | |
| 1-175, gnl|tetNig1|chr11 (7589877-7590002) | |
| 286-578, gnl|bosTau2|chr3 (27418866-27418574) | |
| 286-578, gnl|Hg17|chr1 (112967699-112967407) | |
| 286-578, gnl|Mm7|chr3 (104576102-104576394) | |
| 749-868, gnl|bosTau2|chr3 (27417022-27416903) | |
| 749-868, gnl|Hg17|chr1 (112966048-112965929) | |
| 749-868, gnl|Mm7|chr3 (104577613-104577732) | |
| 1038-1194, gnl|bosTau2|chr3 (27416259-27416103) | |
| 1038-1194, gnl|Hg17|chr1 (112965277-112965121) | |
| 1038-1194, gnl|Mm7|chr3 (104578375-104578531) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| nmm (0.132802) | |
| ese (0.126502) |