Non-Coding RNA Search

Ss1.1-rcov24b_a18.5

Sequence:


               
               AATCGAGGCACAGAAGGTTAAACATCTTACCAAAGTTTCCATAGCCAGTTAAATGCTGGA
GCTAGAATTTGAACCCAGGTGTGCCTCCACTTTTTAATACCAGACCCATCTTTTCAGTTT
CCTATACTATTACCAAGACATTATTTTAAAGTCATTCCCAAACATGCTCCCTTTTGTTTT
ACAGACACCCTCACTCTGCTTCTGCTGCCTGGAATCAGTGGAGCCAGAGAAAGGTGAGTG
TCAAATGAAGATCCATAACAAAGTGTAGATTTCTGCAGAGTGCCAAAAAGCTCTCAAGTG
CCTTCACAAAAGGGGGGTGGGGGAGAGGTGTTTCAGCAGCTCTGCTGCCAGCAGTCCTTT
CCTATCTCCAGGGCAAAGAGGTGGGACTGCCAGGCCAGCTGACCAAGATACCTCTCCAGC
TCTTCCAGCGCAAGCCCAGCAGCTTTCCTACAGCTATTCTGCCTTCCACTTTGTCTTCTT
CCTAGCATCACTCTATGTCATGGTTACCCTCACCAACTGGTTCAGGTAGGATGGAGACGG
GCCTGTGATACTTTTGAAAACCTTGCTATTTTAAGAACAATTCAAGGCTAGTCCTAAGAG
TTCTTAGGAGACACACATGGGTATACCATACTCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCGAGGCACAGAAGGTTAAACATCTTACCAAAGTTTCCATAGCCAGTTAAATGCTGGA
GCTAGAATTTGAACCCAGGTGTGCCTCCACTTTTTAATACCAGACCCATCTTTTCAGTTT
CCTATACTATTACCAAGACATTATTTTAAAGTCATTCCCAAACATGCTCCCTTTTGTTTT
ACAGACACCCTCACTCTGCTTCTGCTGCCTGGAATCAGTGGAGCCAGAGAAAGGTGAGTG
TCAAATGAAGATCCATAACAAAGTGTAGATTTCTGCAGAGTGCCAAAAAGCTCTCAAGTG
CCTTCACAAAAGGGGGGTGGGGGAGAGGTGTTTCAGCAGCTCTGCTGCCAGCAGTCCTTT
CCTATCTCCAGGGCAAAGAGGTGGGACTGCCAGGCCAGCTGACCAAGATACCTCTCCAGC
TCTTCCAGCGCAAGCCCAGCAGCTTTCCTACAGCTATTCTGCCTTCCACTTTGTCTTCTT
CCTAGCATCACTCTATGTCATGGTTACCCTCACCAACTGGTTCAGGTAGGATGGAGACGG
GCCTGTGATACTTTTGAAAACCTTGCTATTTTAAGAACAATTCAAGGCTAGTCCTAAGAG
TTCTTAGGAGACACACATGGGTATACCATACTCTTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               312-422, - strand, RNAz p=0.549231
               

               
               503-612, - strand, RNAz p=0.635237

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-422, - strand, RNAz p=0.549231
               

               
               503-612, - strand, RNAz p=0.635237

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-635, gnl|bosTau2|chr21 (34523579-34522944)
               

               
               1-635, gnl|Hg17|chr15 (41875414-41874776)
               

               
               1-635, gnl|Mm7|chr2 (121193718-121193091)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-635, gnl|bosTau2|chr21 (34523579-34522944)
               

               
               1-635, gnl|Hg17|chr15 (41875414-41874776)
               

               
               1-635, gnl|Mm7|chr2 (121193718-121193091)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               cov (0.132153)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               cov (0.132153)

	312-422, - strand, RNAz p=0.549231
	503-612, - strand, RNAz p=0.635237

	1-635, gnl\|bosTau2\|chr21 (34523579-34522944)
	1-635, gnl\|Hg17\|chr15 (41875414-41874776)
	1-635, gnl\|Mm7\|chr2 (121193718-121193091)