Non-Coding RNA Search

Ss1.1-rcov26b_c14.5.5

Sequence:


               
               ATTTCTCAAAGTCCCTTTGTGCCCCTCTTTGCACAGCACTGATCCCAAGGTAGGTCCCAA
TCTGTGACTTGGGGCCAGGCTGGACATTCCTGAGACAGAGTCTGGCTTTAGTTCAGATTT
CAAGCTACGGTGACTTTGGGACCAGCAGAAAGCAAAAACCCAGGCACCCAGCAGGATTTC
GAGGCTTCCGAGCTGTGTTTCTCTTCAAGACCTCCTAGCTTTGTTCTAGGAGGTCCTCTG
GCTTCCCCAAAGCCAGAGGTTATTTGGAGAAGGCTGGATATTCCCACCAAACTCACCAGC
ATATCCTCAGTTCCTTTCTTCTGGCTGGTTTTCCAAGTTCACGCCTGACGCCAGGATTGC
TGCTTCCAGCTCTCTGGCTCCAGCTTAGGGAGCTGCTGCAGCATGGGGGCCTCTGCGCTT
GGGCAGAGAGCTGCTGAGCTTCCCCCGTGTCCCCAGCCGTGAGGCAGCTGGTGTGGACTC
CAGTTGGGCTGCAGGCAGCCCTGGGCCGGCATAGGGCAGGTACTTCTTGACAGCCTGGTG
AGAAACAGTCCCCTTGGCCACCTGGCTGGCCTCTCTGGGAATAGTCCTCTTCCTGGCCGG
GTGGATGGGGACGGCTGCTGACACAGGAAAGAGGAGATCCCAGGTGAGGCTTAGGAAACT
GCCAGAGCCAACCTGAAGCAGAGACTCCACTGGGGAAGTTTTCAGAAAGAAATCATTGTC
CTGCCTGTGAGATAGGCCAGGCGGGTCCACCGTGGCCAGTCACATGAGCATCTCAAAGCC
AAGAACCATCAGAGGCTACTGCTTCCCTTTCTAAGGCGCTGGGGAAAGGGGCCTCCTCTC
TGCTCCCCCTTGGCTTCATTTTAAGGATGAGCTCAACTTAGAGGCATTGGGACTTTTCTT
CCCATTCCTTGATGGACCAACAGTGCTGCTTGCACTCTCGGCTTGTAACTTTCAGGTTGA
TTTCTGCCCCTGATCAGACATCCATGTGGCTTCTTTAAGAAGACAGCACCTCCTATGTGC
CAGGCACTGTGTTAGGCACTTTTATATATACATCCCCTCTTTAGGATGAGACTAAGTGAT
GGGGACGTCCCTTATTAAAGGCCCCTGAGTAATGGATAAACGAAAACACTTGTGAGAAGG
TCTTTCTCCAAAGAGCCAAGGCAAGATTGCCTTTGGCCTGAAGTTTGTTCTCAAAGACCC
ACCCCCTACAATAGCCTCCCCACGCTGAACTTCTTTTCCCTGCCATGTGCTCTTTTGCGC
TCTTGAGGTGGTTGGAAGGGTAACCTGAGTCCTTGTGGACTTTGTGGACCAATAGGGTAT
GTGGGGCGTGTAACTTTCTTTTAAAAACTTAAGTAAAGGGGTCTTTGCTACTTTCTGCTT
GCTGAGTCTTCTTGGCATCCAACCTAAAAGCCAGCATCTCACTATTTATTGACAGGGTGT
GTGTGTGTGTGTGTGTGTGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTCTCAAAGTCCCTTTGTGCCCCTCTTTGCACAGCACTGATCCCAAGGTAGGTCCCAA
TCTGTGACTTGGGGCCAGGCTGGACATTCCTGAGACAGAGTCTGGCTTTAGTTCAGATTT
CAAGCTACGGTGACTTTGGGACCAGCAGAAAGCAAAAACCCAGGCACCCAGCAGGATTTC
GAGGCTTCCGAGCTGTGTTTCTCTTCAAGACCTCCTAGCTTTGTTCTAGGAGGTCCTCTG
GCTTCCCCAAAGCCAGAGGTTATTTGGAGAAGGCTGGATATTCCCACCAAACTCACCAGC
ATATCCTCAGTTCCTTTCTTCTGGCTGGTTTTCCAAGTTCACGCCTGACGCCAGGATTGC
TGCTTCCAGCTCTCTGGCTCCAGCTTAGGGAGCTGCTGCAGCATGGGGGCCTCTGCGCTT
GGGCAGAGAGCTGCTGAGCTTCCCCCGTGTCCCCAGCCGTGAGGCAGCTGGTGTGGACTC
CAGTTGGGCTGCAGGCAGCCCTGGGCCGGCATAGGGCAGGTACTTCTTGACAGCCTGGTG
AGAAACAGTCCCCTTGGCCACCTGGCTGGCCTCTCTGGGAATAGTCCTCTTCCTGGCCGG
GTGGATGGGGACGGCTGCTGACACAGGAAAGAGGAGATCCCAGGTGAGGCTTAGGAAACT
GCCAGAGCCAACCTGAAGCAGAGACTCCACTGGGGAAGTTTTCAGAAAGAAATCATTGTC
CTGCCTGTGAGATAGGCCAGGCGGGTCCACCGTGGCCAGTCACATGAGCATCTCAAAGCC
AAGAACCATCAGAGGCTACTGCTTCCCTTTCTAAGGCGCTGGGGAAAGGGGCCTCCTCTC
TGCTCCCCCTTGGCTTCATTTTAAGGATGAGCTCAACTTAGAGGCATTGGGACTTTTCTT
CCCATTCCTTGATGGACCAACAGTGCTGCTTGCACTCTCGGCTTGTAACTTTCAGGTTGA
TTTCTGCCCCTGATCAGACATCCATGTGGCTTCTTTAAGAAGACAGCACCTCCTATGTGC
CAGGCACTGTGTTAGGCACTTTTATATATACATCCCCTCTTTAGGATGAGACTAAGTGAT
GGGGACGTCCCTTATTAAAGGCCCCTGAGTAATGGATAAACGAAAACACTTGTGAGAAGG
TCTTTCTCCAAAGAGCCAAGGCAAGATTGCCTTTGGCCTGAAGTTTGTTCTCAAAGACCC
ACCCCCTACAATAGCCTCCCCACGCTGAACTTCTTTTCCCTGCCATGTGCTCTTTTGCGC
TCTTGAGGTGGTTGGAAGGGTAACCTGAGTCCTTGTGGACTTTGTGGACCAATAGGGTAT
GTGGGGCGTGTAACTTTCTTTTAAAAACTTAAGTAAAGGGGTCTTTGCTACTTTCTGCTT
GCTGAGTCTTCTTGGCATCCAACCTAAAAGCCAGCATCTCACTATTTATTGACAGGGTGT
GTGTGTGTGTGTGTGTGTGTGTGT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               2-113, - strand, RNAz p=0.877418
               

               
               192-343, + strand, RNAz p=0.795674
               

               
               707-901, - strand, RNAz p=0.915572

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-113, - strand, RNAz p=0.877418
               

               
               192-343, + strand, RNAz p=0.795674
               

               
               707-901, - strand, RNAz p=0.915572

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               757-845, - strand, RNAmicro p=0.970367
               

               
               208-285, + strand, RNAmicro p=0.969266
               

               
               776-824, + strand, RNAmicro p=0.95583

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               757-845, - strand, RNAmicro p=0.970367
               

               
               208-285, + strand, RNAmicro p=0.969266
               

               
               776-824, + strand, RNAmicro p=0.95583

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1463, gnl|bosTau2|chr11 (59143642-59145101)
               

               
               2-1463, gnl|Hg17|chr2 (28549187-28550654)
               

               
               2-1463, gnl|Mm7|chr5 (31187702-31189165)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1463, gnl|bosTau2|chr11 (59143642-59145101)
               

               
               2-1463, gnl|Hg17|chr2 (28549187-28550654)
               

               
               2-1463, gnl|Mm7|chr5 (31187702-31189165)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nep (0.183925)
               

               
               ton (0.1755)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	2-113, - strand, RNAz p=0.877418
	192-343, + strand, RNAz p=0.795674
	707-901, - strand, RNAz p=0.915572

	757-845, - strand, RNAmicro p=0.970367
	208-285, + strand, RNAmicro p=0.969266
	776-824, + strand, RNAmicro p=0.95583

	2-1463, gnl\|bosTau2\|chr11 (59143642-59145101)
	2-1463, gnl\|Hg17\|chr2 (28549187-28550654)
	2-1463, gnl\|Mm7\|chr5 (31187702-31189165)

	nep (0.183925)
	ton (0.1755)
	cov (0.132153)
	clu (0.119646)
	med (0.116252)
	jca (0.11396)