Non-Coding RNA Search

Ss1.1-rcov26b_h24.5

Sequence:


               
               CTACGGCGGGCATGTCACAGATGACTGGGACCGGCGCCTGCTCACCACCTACATCAATGA
CTACTTCTGTGACCCGTCTCTGTCCACCCCCTCCTACCGGTTGTCAGTACTGGAGAACTA
TTTCATCCCCAAGGACGGGAGCCTGGCCTCCTACAAGGAGTACATCAGCATGCTGCCCAG
CATGGACCCCCCCGAGGCCTTGGGCCAGCACCCCAATGCAGACGTGGCCTCGCAGATCAC
GGAGGCGCGGACTCTCTTTGAGACCCTGCTTTCCCTGCAACCCCAGATCACACCCACCAG
GGCGGGAGGCCAGAGCCGAGAAGAGAAGGTCCTCGAGCTGGCCGCTGACGTGAAACAGAA
GATTCCTGAAATGATCGACTATGAGGGGACCCGAAAACTGCTGGCTCTGGACCCCTCCCC
CCTCAATGTGGTCCTTCTGCAGGAGATCCAGAGATACAACAAGCTTATGGAGACCATCCT
GTTCTCACTGACGGACCTAGAACAAGGCATCCAGGGCCTCATCGTCATGTCTACGAGCCT
GGAAGAGATCTTCAATTGCATCTTTGATGCCCACGTCCCTCCGCTCTGGGGAAAGGCATA
TCCCTCACAAAAGCCATTGGCTTCATGGACCCGGGACTTGGCTCTGCGTGTGGAACAGTT
TGAGCTGTGGGCCAGCCGCGCACGGCCTCCTGTGATCTTCTGGCTGTCAGGCTTCACCTT
TCCCACCGGCTTCCTCACTGCTGTGCTGCAGTCTTCAGCTCGCCAAAACAATATTTCAGT
GGACAGCCTCTCTTGGGAGTTTGTCGTCTCCACCGTGGACGACAGCAACCTAGTATATCC
ACCCAAGGACGGGGTCTGGGTTCGGGGCCTATACCTGGAGGGTGCCGGCTGGGACCGGAA
GAACTCCTGCTTGGTGGAGGCAGAGCCCATGCAGCTTGTCTGCCTCATGCCCACGATCCA
CTTCCGACCTACAGAGAGCCGCAAGAAGAGTGCCAAGGGCATGTACTCCTGTCCCTGCTA
TTACTATCCCAACCGGGCAGGCAGCTCAGACCGTGCATCCTTTGTCATTGGCATCGACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACGGCGGGCATGTCACAGATGACTGGGACCGGCGCCTGCTCACCACCTACATCAATGA
CTACTTCTGTGACCCGTCTCTGTCCACCCCCTCCTACCGGTTGTCAGTACTGGAGAACTA
TTTCATCCCCAAGGACGGGAGCCTGGCCTCCTACAAGGAGTACATCAGCATGCTGCCCAG
CATGGACCCCCCCGAGGCCTTGGGCCAGCACCCCAATGCAGACGTGGCCTCGCAGATCAC
GGAGGCGCGGACTCTCTTTGAGACCCTGCTTTCCCTGCAACCCCAGATCACACCCACCAG
GGCGGGAGGCCAGAGCCGAGAAGAGAAGGTCCTCGAGCTGGCCGCTGACGTGAAACAGAA
GATTCCTGAAATGATCGACTATGAGGGGACCCGAAAACTGCTGGCTCTGGACCCCTCCCC
CCTCAATGTGGTCCTTCTGCAGGAGATCCAGAGATACAACAAGCTTATGGAGACCATCCT
GTTCTCACTGACGGACCTAGAACAAGGCATCCAGGGCCTCATCGTCATGTCTACGAGCCT
GGAAGAGATCTTCAATTGCATCTTTGATGCCCACGTCCCTCCGCTCTGGGGAAAGGCATA
TCCCTCACAAAAGCCATTGGCTTCATGGACCCGGGACTTGGCTCTGCGTGTGGAACAGTT
TGAGCTGTGGGCCAGCCGCGCACGGCCTCCTGTGATCTTCTGGCTGTCAGGCTTCACCTT
TCCCACCGGCTTCCTCACTGCTGTGCTGCAGTCTTCAGCTCGCCAAAACAATATTTCAGT
GGACAGCCTCTCTTGGGAGTTTGTCGTCTCCACCGTGGACGACAGCAACCTAGTATATCC
ACCCAAGGACGGGGTCTGGGTTCGGGGCCTATACCTGGAGGGTGCCGGCTGGGACCGGAA
GAACTCCTGCTTGGTGGAGGCAGAGCCCATGCAGCTTGTCTGCCTCATGCCCACGATCCA
CTTCCGACCTACAGAGAGCCGCAAGAAGAGTGCCAAGGGCATGTACTCCTGTCCCTGCTA
TTACTATCCCAACCGGGCAGGCAGCTCAGACCGTGCATCCTTTGTCATTGGCATCGACCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61885555|ref|XP_602677.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61885555|ref|XP_602677.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               99-330, gnl|bosTau2|chr19 (15402351-15402120)
               

               
               99-330, gnl|Hg17|chr17 (7675128-7675359)
               

               
               99-330, gnl|Mm7|chr11 (69504784-69504553)
               


               
               594-772, gnl|bosTau2|chr19 (15401163-15400985)
               

               
               594-772, gnl|Hg17|chr17 (7676620-7676798)
               

               
               594-772, gnl|Mm7|chr11 (69503482-69503304)
               


               
               842-999, gnl|bosTau2|chr19 (15400626-15400469)
               

               
               842-999, gnl|Hg17|chr17 (7677108-7677265)
               

               
               842-999, gnl|Mm7|chr11 (69503000-69502843)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-330, gnl|bosTau2|chr19 (15402351-15402120)
               

               
               99-330, gnl|Hg17|chr17 (7675128-7675359)
               

               
               99-330, gnl|Mm7|chr11 (69504784-69504553)
               


               
               594-772, gnl|bosTau2|chr19 (15401163-15400985)
               

               
               594-772, gnl|Hg17|chr17 (7676620-7676798)
               

               
               594-772, gnl|Mm7|chr11 (69503482-69503304)
               


               
               842-999, gnl|bosTau2|chr19 (15400626-15400469)
               

               
               842-999, gnl|Hg17|chr17 (7677108-7677265)
               

               
               842-999, gnl|Mm7|chr11 (69503000-69502843)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	99-330, gnl\|bosTau2\|chr19 (15402351-15402120)
	99-330, gnl\|Hg17\|chr17 (7675128-7675359)
	99-330, gnl\|Mm7\|chr11 (69504784-69504553)

	594-772, gnl\|bosTau2\|chr19 (15401163-15400985)
	594-772, gnl\|Hg17\|chr17 (7676620-7676798)
	594-772, gnl\|Mm7\|chr11 (69503482-69503304)

	842-999, gnl\|bosTau2\|chr19 (15400626-15400469)
	842-999, gnl\|Hg17\|chr17 (7677108-7677265)
	842-999, gnl\|Mm7\|chr11 (69503000-69502843)