Non-Coding RNA Search

Ss1.1-rcov26b_k16.5

Sequence:


               
               CGCAGTCGCAGACTGCTGAACCGGGATCTGGGGCAGCTGAGAGGTTCTTCAGCCCTTAGA
CGCCAGTCACTCTGACTGCGGGAGACTTTGGGCTGTTTTAGTACCATGCATCCTTTACAG
CATGTCCTCCAAGTGCAAAGGTGTCTGAGGTGGGGGCCCTTGGCCTCTGGGTCCTGGCTG
CTGCTCAGGACCTGCAGGGCACACAGTGGTGTCCCCAGCACTGCACGACCCAGTCCAGAG
AGGCAGCAGGAAGATGGCGTTTGGAAGGATTTCAGCTCCAGGCTGGCCAGTGGACCAACT
TTTCAGCATTTTTTAAGAAGTGCTTCAGTTCCTCAAGAGAAACCACCTTCTCCAGATGTG
GAGGACCCACCCCCATATCTCACAGTGGATGAACTTTTAGGAAAGCAGAGAAAAGTCTAC
CTTGAGACCTATGGCTGCCAGATGAATGTGAATGACACAGAGATAGCCTGGTCCATCTTA
CAGAAGAATGGCTACCTGCGGACCAGTAACCTTCAGGAGGCTGATGTGATCCTCCTTGTC
ACATGTTCTATCAGGGAGAAGGCTGAACAGACCATTTGGAATCGTTTACATCAGCTCAAA
GCCCTGAAGTCAAAACGGCTCCGCTCCCAAGTACCTCTGAGGATTGGGATTCTAGGCTGC
ATGGCTGAGAGGTTGAAGGAGGAGATCCTCAACAGGGAGAAGATGGTGGATATTTTGGCT
GGTCCGGATGCCTATCGGGACCTTCCTCGGCTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGTCGCAGACTGCTGAACCGGGATCTGGGGCAGCTGAGAGGTTCTTCAGCCCTTAGA
CGCCAGTCACTCTGACTGCGGGAGACTTTGGGCTGTTTTAGTACCATGCATCCTTTACAG
CATGTCCTCCAAGTGCAAAGGTGTCTGAGGTGGGGGCCCTTGGCCTCTGGGTCCTGGCTG
CTGCTCAGGACCTGCAGGGCACACAGTGGTGTCCCCAGCACTGCACGACCCAGTCCAGAG
AGGCAGCAGGAAGATGGCGTTTGGAAGGATTTCAGCTCCAGGCTGGCCAGTGGACCAACT
TTTCAGCATTTTTTAAGAAGTGCTTCAGTTCCTCAAGAGAAACCACCTTCTCCAGATGTG
GAGGACCCACCCCCATATCTCACAGTGGATGAACTTTTAGGAAAGCAGAGAAAAGTCTAC
CTTGAGACCTATGGCTGCCAGATGAATGTGAATGACACAGAGATAGCCTGGTCCATCTTA
CAGAAGAATGGCTACCTGCGGACCAGTAACCTTCAGGAGGCTGATGTGATCCTCCTTGTC
ACATGTTCTATCAGGGAGAAGGCTGAACAGACCATTTGGAATCGTTTACATCAGCTCAAA
GCCCTGAAGTCAAAACGGCTCCGCTCCCAAGTACCTCTGAGGATTGGGATTCTAGGCTGC
ATGGCTGAGAGGTTGAAGGAGGAGATCCTCAACAGGGAGAAGATGGTGGATATTTTGGCT
GGTCCGGATGCCTATCGGGACCTTCCTCGGCTGCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61834545|ref|XP_591885.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61834545|ref|XP_591885.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               83-281, - strand, RNAz p=0.916436
               

               
               298-415, + strand, RNAz p=0.84512
               

               
               320-415, - strand, RNAz p=0.994072

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-281, - strand, RNAz p=0.916436
               

               
               298-415, + strand, RNAz p=0.84512
               

               
               320-415, - strand, RNAz p=0.994072

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of AY462284, +
               

               
               3' of AY462284, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY462284, +
               

               
               3' of AY462284, -

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               83-415, gnl|bosTau2|chr13 (43578144-43578476)
               

               
               83-415, gnl|canFam2|chr24 (25596089-25596493)
               

               
               83-415, gnl|dasNov1|scaffold_35015 (7701-8110)
               

               
               83-415, gnl|echTel1|scaffold_302515 (16955-17368)
               

               
               83-415, gnl|hg17|chr20 (31448172-31448584)
               

               
               83-415, gnl|Hg17|chr20 (31448553-31448228)
               

               
               83-415, gnl|loxAfr1|scaffold_16449 (28751-29165)
               

               
               83-415, gnl|mm7|chr2 (154111447-154111843)
               

               
               83-415, gnl|Mm7|chr2 (154111815-154111494)
               

               
               83-415, gnl|monDom2|scaffold_6 (848618-849036)
               

               
               83-415, gnl|panTro1|chr21 (33425384-33425796)
               

               
               83-415, gnl|rheMac2|chr10 (31221728-31221316)
               

               
               83-415, gnl|rn3|chr3 (144743473-144743869)
               


               
               553-656, gnl|bosTau2|chr13 (43581700-43581803)
               

               
               553-656, gnl|Hg17|chr20 (31443711-31443608)
               

               
               553-656, gnl|Mm7|chr2 (154106922-154106819)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-415, gnl|bosTau2|chr13 (43578144-43578476)
               

               
               83-415, gnl|canFam2|chr24 (25596089-25596493)
               

               
               83-415, gnl|dasNov1|scaffold_35015 (7701-8110)
               

               
               83-415, gnl|echTel1|scaffold_302515 (16955-17368)
               

               
               83-415, gnl|hg17|chr20 (31448172-31448584)
               

               
               83-415, gnl|Hg17|chr20 (31448553-31448228)
               

               
               83-415, gnl|loxAfr1|scaffold_16449 (28751-29165)
               

               
               83-415, gnl|mm7|chr2 (154111447-154111843)
               

               
               83-415, gnl|Mm7|chr2 (154111815-154111494)
               

               
               83-415, gnl|monDom2|scaffold_6 (848618-849036)
               

               
               83-415, gnl|panTro1|chr21 (33425384-33425796)
               

               
               83-415, gnl|rheMac2|chr10 (31221728-31221316)
               

               
               83-415, gnl|rn3|chr3 (144743473-144743869)
               


               
               553-656, gnl|bosTau2|chr13 (43581700-43581803)
               

               
               553-656, gnl|Hg17|chr20 (31443711-31443608)
               

               
               553-656, gnl|Mm7|chr2 (154106922-154106819)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.132153)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               cty (0.10408)

	83-281, - strand, RNAz p=0.916436
	298-415, + strand, RNAz p=0.84512
	320-415, - strand, RNAz p=0.994072

	83-415, gnl\|bosTau2\|chr13 (43578144-43578476)
	83-415, gnl\|canFam2\|chr24 (25596089-25596493)
	83-415, gnl\|dasNov1\|scaffold_35015 (7701-8110)
	83-415, gnl\|echTel1\|scaffold_302515 (16955-17368)
	83-415, gnl\|hg17\|chr20 (31448172-31448584)
	83-415, gnl\|Hg17\|chr20 (31448553-31448228)
	83-415, gnl\|loxAfr1\|scaffold_16449 (28751-29165)
	83-415, gnl\|mm7\|chr2 (154111447-154111843)
	83-415, gnl\|Mm7\|chr2 (154111815-154111494)
	83-415, gnl\|monDom2\|scaffold_6 (848618-849036)
	83-415, gnl\|panTro1\|chr21 (33425384-33425796)
	83-415, gnl\|rheMac2\|chr10 (31221728-31221316)
	83-415, gnl\|rn3\|chr3 (144743473-144743869)

	553-656, gnl\|bosTau2\|chr13 (43581700-43581803)
	553-656, gnl\|Hg17\|chr20 (31443711-31443608)
	553-656, gnl\|Mm7\|chr2 (154106922-154106819)