Non-Coding RNA Search

Ss1.1-rcov27b_d14.5

Sequence:


               
               CGGGCCTCGGGGCCCCGCAGGCGCGTTTGTGCGCCGGGTTGCCAAGATGTCGTTCCCAAA
ATACAAGCCTTCCCGCCTGGCAACCCTGCCAGCTACTCTCGACCCAGCTGAATACGACAT
ATCTCCGGAAACCCGGAAGGCACAAGCCGAGCGGTTGGCCATAAGATCCCGGCTTAAGCG
GGAGTACCTGCTCCAGTACAACGACCCTAACCGCCTAGGGGTCATCGAAGATCCTGCCTT
GATTCGTTGGACCTACGCAAGATCAGCAAATATCTATCCCAATTTCAGACCCACTCCCAA
GACCTCACTCTTAGGAGCACTCTTTGGAATTGGGCCCCTCTTCTTCTGGTATTATGTTTT
CAAAACTGACAGAGATAAGAAAGAAAAACTTATCCAGGAAGGAAAATTGGATCAAACATT
TAACATCTCATATTAAGTCTGGCAATGATGACTGTATGTACTATTGTTTAAATAAATCCA
TTAACCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCCTCGGGGCCCCGCAGGCGCGTTTGTGCGCCGGGTTGCCAAGATGTCGTTCCCAAA
ATACAAGCCTTCCCGCCTGGCAACCCTGCCAGCTACTCTCGACCCAGCTGAATACGACAT
ATCTCCGGAAACCCGGAAGGCACAAGCCGAGCGGTTGGCCATAAGATCCCGGCTTAAGCG
GGAGTACCTGCTCCAGTACAACGACCCTAACCGCCTAGGGGTCATCGAAGATCCTGCCTT
GATTCGTTGGACCTACGCAAGATCAGCAAATATCTATCCCAATTTCAGACCCACTCCCAA
GACCTCACTCTTAGGAGCACTCTTTGGAATTGGGCCCCTCTTCTTCTGGTATTATGTTTT
CAAAACTGACAGAGATAAGAAAGAAAAACTTATCCAGGAAGGAAAATTGGATCAAACATT
TAACATCTCATATTAAGTCTGGCAATGATGACTGTATGTACTATTGTTTAAATAAATCCA
TTAACCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57109556|ref|XP_535753.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57109556|ref|XP_535753.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-504, gnl|bosTau2|chr18 (52706939-52706454)
               

               
               17-504, gnl|Hg17|chr3 (67647024-67647505)
               

               
               17-504, gnl|Mm7|chr15 (73890475-73889995)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-504, gnl|bosTau2|chr18 (52706939-52706454)
               

               
               17-504, gnl|Hg17|chr3 (67647024-67647505)
               

               
               17-504, gnl|Mm7|chr15 (73890475-73889995)

Expressed library(ies): 35 entry(ies)

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Expressed library(ies): 35 entry(ies)

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               che (0.817884)
               

               
               cag (0.755972)
               

               
               cki (0.660939)
               

               
               mas (0.630915)
               

               
               jej (0.593531)
               

               
               nep (0.551775)
               

               
               ssp (0.542079)
               

               
               ill (0.526778)
               

               
               ton (0.526501)
               

               
               duo (0.518403)
               

               
               cje (0.495704)
               

               
               cbe (0.478469)
               

               
               ecc (0.46014)
               

               
               hlv (0.417769)
               

               
               ebs (0.354904)
               

               
               fty (0.351679)
               

               
               cut (0.339847)
               

               
               nco (0.323468)
               

               
               cli (0.305623)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.817884)
               

               
               cag (0.755972)
               

               
               cki (0.660939)
               

               
               mas (0.630915)
               

               
               jej (0.593531)
               

               
               nep (0.551775)
               

               
               ssp (0.542079)
               

               
               ill (0.526778)
               

               
               ton (0.526501)
               

               
               duo (0.518403)
               

               
               cje (0.495704)
               

               
               cbe (0.478469)
               

               
               ecc (0.46014)
               

               
               hlv (0.417769)
               

               
               ebs (0.354904)
               

               
               fty (0.351679)
               

               
               cut (0.339847)
               

               
               nco (0.323468)
               

               
               cli (0.305623)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)

	17-504, gnl\|bosTau2\|chr18 (52706939-52706454)
	17-504, gnl\|Hg17\|chr3 (67647024-67647505)
	17-504, gnl\|Mm7\|chr15 (73890475-73889995)

	che (0.817884)
	cag (0.755972)
	cki (0.660939)
	mas (0.630915)
	jej (0.593531)
	nep (0.551775)
	ssp (0.542079)
	ill (0.526778)
	ton (0.526501)
	duo (0.518403)
	cje (0.495704)
	cbe (0.478469)
	ecc (0.46014)
	hlv (0.417769)
	ebs (0.354904)
	fty (0.351679)
	cut (0.339847)
	nco (0.323468)
	cli (0.305623)
	sme (0.305437)
	bfe (0.299715)
	fce (0.271592)
	nmm (0.265604)
	cov (0.264306)
	eep (0.245128)
	nms (0.213858)
	tes (0.207814)
	nbm (0.198649)
	col (0.195008)
	nlu (0.191681)
	fhi (0.169578)
	nje (0.16592)
	hyp (0.142837)
	pty (0.142714)
	cst (0.140036)