Non-Coding RNA Search

Ss1.1-rcov28b_a9.5

Sequence:


               
               CGCCCCCCACCCCCTCCATGTCCTCCCTGCCTCTGGCAGCGCTCAATGTGCGAGTGCGGC
ACCGCCTGTCGCTCTTCCTAAACGTGCGGACGCAGGTGGCTGCGGACTGGACTGGGCTGG
CGGAGGAGATGAACTTCGAGTACCTGGAGATCCGGCGGCTGGAGACGCATCCCGACCCCA
CGCGCAGCCTGCTGGACGACTGGCAAGGACGCCCTGGCGCCTCGGTGGGCCGCCTGCTCG
AGCTGCTTGCCAAGCTGGGCCGCGACGACGTGCTGGTGGAACTGGGGCCCAGCATTGAAG
AGGACTGCCGAAAGTATATTCTGAAGCAGCAGCAGGAGGCAGCTGAGAAGCCTTTACAGG
TGGACTCTGTAGATAGCAGCATCCCTTGGATGTCAGGCATCACCATTCGAGATGACCCCC
TGGGGCAAATGCCTGAGCATTTTGATGCCTTCATCTGCTACTGCCCCAGCGATATCCAGT
TTGTGCAGGAGATGATCCGGCAGCTGGAACAGACCAACTATCGGCTGAAGTTATGTGTGT
CTGACCGAGATGTCCTGCCTGGCACCTGCGTCTGGTCCATTGCTAGTGAACTCATTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCCCCCACCCCCTCCATGTCCTCCCTGCCTCTGGCAGCGCTCAATGTGCGAGTGCGGC
ACCGCCTGTCGCTCTTCCTAAACGTGCGGACGCAGGTGGCTGCGGACTGGACTGGGCTGG
CGGAGGAGATGAACTTCGAGTACCTGGAGATCCGGCGGCTGGAGACGCATCCCGACCCCA
CGCGCAGCCTGCTGGACGACTGGCAAGGACGCCCTGGCGCCTCGGTGGGCCGCCTGCTCG
AGCTGCTTGCCAAGCTGGGCCGCGACGACGTGCTGGTGGAACTGGGGCCCAGCATTGAAG
AGGACTGCCGAAAGTATATTCTGAAGCAGCAGCAGGAGGCAGCTGAGAAGCCTTTACAGG
TGGACTCTGTAGATAGCAGCATCCCTTGGATGTCAGGCATCACCATTCGAGATGACCCCC
TGGGGCAAATGCCTGAGCATTTTGATGCCTTCATCTGCTACTGCCCCAGCGATATCCAGT
TTGTGCAGGAGATGATCCGGCAGCTGGAACAGACCAACTATCGGCTGAAGTTATGTGTGT
CTGACCGAGATGTCCTGCCTGGCACCTGCGTCTGGTCCATTGCTAGTGAACTCATTGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26354939|dbj|BAC41096.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26354939|dbj|BAC41096.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-304, gnl|bosTau2|chr22 (8726360-8726057)
               

               
               1-304, gnl|Hg17|chr3 (38155227-38155530)
               

               
               1-304, gnl|Mm7|chr9 (119020132-119019829)
               


               
               398-598, gnl|bosTau2|chr22 (8724735-8724538)
               

               
               398-598, gnl|Hg17|chr3 (38156858-38157057)
               

               
               398-598, gnl|Mm7|chr9 (119018414-119018216)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-304, gnl|bosTau2|chr22 (8726360-8726057)
               

               
               1-304, gnl|Hg17|chr3 (38155227-38155530)
               

               
               1-304, gnl|Mm7|chr9 (119020132-119019829)
               


               
               398-598, gnl|bosTau2|chr22 (8724735-8724538)
               

               
               398-598, gnl|Hg17|chr3 (38156858-38157057)
               

               
               398-598, gnl|Mm7|chr9 (119018414-119018216)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.132153)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               eep (0.122564)

	1-304, gnl\|bosTau2\|chr22 (8726360-8726057)
	1-304, gnl\|Hg17\|chr3 (38155227-38155530)
	1-304, gnl\|Mm7\|chr9 (119020132-119019829)

	398-598, gnl\|bosTau2\|chr22 (8724735-8724538)
	398-598, gnl\|Hg17\|chr3 (38156858-38157057)
	398-598, gnl\|Mm7\|chr9 (119018414-119018216)