Non-Coding RNA Search

Ss1.1-rcov33b_e4.5

Sequence:


               
               GCTGACCAGGAGGCCATCAAGGGCATGGCGATTTCTCAGACCTGAAGCCTGGGGTGCCTC
TTGCCAGGATGTCTAAGACACTTGAATAATTGCTGTTTGCACTTACTGCGCGGTCAGGCC
ACGTCACTACATCTCTATGCAAGGGGAGGGCGAGGCGGAGTGGTGGTCGTGGCTCTCAGC
TAACTATTCAAAGATCTTTTCCAGTTGATGAATCTATTTTCATATTTATGAAGGAGTCTT
AATGTCCTGCCCTGTAAGACTTTCAGCCTTGTGGCTGGGAGTGGGGCTGGTCTTGTAGGC
CCGAGGGCCTGCTCTGTGTATTTGTCAACACGTCACACGCCCGGTTGGTTAAATGGTTTA
TACGTGGACTGAGGTCTTCCCTTTCTGCTACGGGAACAGTCTGTCCTTCTAGAGCCACAG
TAAGAAATAACCAAAGATGAAGCTGGTCAAATATTTTCATATCTTGTTTCTGTTGATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGACCAGGAGGCCATCAAGGGCATGGCGATTTCTCAGACCTGAAGCCTGGGGTGCCTC
TTGCCAGGATGTCTAAGACACTTGAATAATTGCTGTTTGCACTTACTGCGCGGTCAGGCC
ACGTCACTACATCTCTATGCAAGGGGAGGGCGAGGCGGAGTGGTGGTCGTGGCTCTCAGC
TAACTATTCAAAGATCTTTTCCAGTTGATGAATCTATTTTCATATTTATGAAGGAGTCTT
AATGTCCTGCCCTGTAAGACTTTCAGCCTTGTGGCTGGGAGTGGGGCTGGTCTTGTAGGC
CCGAGGGCCTGCTCTGTGTATTTGTCAACACGTCACACGCCCGGTTGGTTAAATGGTTTA
TACGTGGACTGAGGTCTTCCCTTTCTGCTACGGGAACAGTCTGTCCTTCTAGAGCCACAG
TAAGAAATAACCAAAGATGAAGCTGGTCAAATATTTTCATATCTTGTTTCTGTTGATTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               194-391, + strand, RNAz p=0.997945

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-391, + strand, RNAz p=0.997945

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               194-331, AJ820303 KN206 Bos sp. cDNA clone C0006018a19, mRNA sequence 
(emb|AJ820303.1|), blast E-value=1.96182e-44, identity=92.03% 
               

               
               194-372, LIB30321_029_B02_SP6_1 LIB30321 Canis familiaris cDNA clone 
(gb|DN270938.1|), blast E-value=0, identity=88.83% 
               

               
               194-331, 1266846 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN523359.1|), 
blast E-value=1.96182e-44, identity=92.03% 
               

               
               194-372, GL-Cf-10099 GLGC-LIB0001-cf Canis familiaris Normalized Mixed 
(gb|DN753304.1|), blast E-value=0, identity=88.83% 
               

               
               194-372, nae10e05.x1 Dog eye eye minus lens and cornea. Unnormalized (nae) 
(gb|DN877003.1|), blast E-value=5.60519e-45, identity=88.27% 
               

               
               194-331, 1599454 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY462349.1|), 
blast E-value=1.96182e-44, identity=92.03%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               194-331, AJ820303 KN206 Bos sp. cDNA clone C0006018a19, mRNA sequence 
(emb|AJ820303.1|), blast E-value=1.96182e-44, identity=92.03% 
               

               
               194-372, LIB30321_029_B02_SP6_1 LIB30321 Canis familiaris cDNA clone 
(gb|DN270938.1|), blast E-value=0, identity=88.83% 
               

               
               194-331, 1266846 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN523359.1|), 
blast E-value=1.96182e-44, identity=92.03% 
               

               
               194-372, GL-Cf-10099 GLGC-LIB0001-cf Canis familiaris Normalized Mixed 
(gb|DN753304.1|), blast E-value=0, identity=88.83% 
               

               
               194-372, nae10e05.x1 Dog eye eye minus lens and cornea. Unnormalized (nae) 
(gb|DN877003.1|), blast E-value=5.60519e-45, identity=88.27% 
               

               
               194-331, 1599454 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY462349.1|), 
blast E-value=1.96182e-44, identity=92.03%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_007170, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_007170, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-472, gnl|bosTau2|chr3 (70443908-70444381)
               

               
               1-472, gnl|Hg17|chr1 (45479203-45478718)
               

               
               1-472, gnl|Mm7|chr4 (116180000-116180465)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-472, gnl|bosTau2|chr3 (70443908-70444381)
               

               
               1-472, gnl|Hg17|chr1 (45479203-45478718)
               

               
               1-472, gnl|Mm7|chr4 (116180000-116180465)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cte (0.58548)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               cov (0.132153)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               cov (0.132153)

	194-331, AJ820303 KN206 Bos sp. cDNA clone C0006018a19, mRNA sequence (emb\|AJ820303.1\|), blast E-value=1.96182e-44, identity=92.03%
	194-372, LIB30321_029_B02_SP6_1 LIB30321 Canis familiaris cDNA clone (gb\|DN270938.1\|), blast E-value=0, identity=88.83%
	194-331, 1266846 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN523359.1\|), blast E-value=1.96182e-44, identity=92.03%
	194-372, GL-Cf-10099 GLGC-LIB0001-cf Canis familiaris Normalized Mixed (gb\|DN753304.1\|), blast E-value=0, identity=88.83%
	194-372, nae10e05.x1 Dog eye eye minus lens and cornea. Unnormalized (nae) (gb\|DN877003.1\|), blast E-value=5.60519e-45, identity=88.27%
	194-331, 1599454 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb\|DY462349.1\|), blast E-value=1.96182e-44, identity=92.03%

	1-472, gnl\|bosTau2\|chr3 (70443908-70444381)
	1-472, gnl\|Hg17\|chr1 (45479203-45478718)
	1-472, gnl\|Mm7\|chr4 (116180000-116180465)

	cte (0.58548)
	ill (0.175593)
	duo (0.172801)
	cje (0.165235)
	cst (0.140036)
	cov (0.132153)