Non-Coding RNA Search

Ss1.1-rcov34b_f2.5

Sequence:


               
               GATGGATCATCAGCCCTCATGCTGGCCTGTTGCCATGGCAACACTGACATGGTACGGCTG
CTCCTGGCACACCCGGCATGTGACAGCAGCCTGACTGACAAGGCTGGCCGAACAGCTTTG
TCCATCGTTCTGAAATCACCCGCCCATGTGGAAATTGCAGGGCTGCTGCGGGCCCACGCA
AAGCAGGGCAGGTCCCTGGGGCCATAGGGGCTGCGGAAGAACTGGCAGCTGGGAACAGAA
GGCGCCTTCTTTGGACTCCTCCCTCGCCCTTGGAGAGGGCACGGGTCATAGCCAGGGGGC
CGCCCCTCCAGAGGAGAAACTATGTCAAATATGCACATACATTCCTGCTGTATAATTCTG
CTCATTAGGATGCTTTGTAGTTTTTGCCTTAGGCCAAGCCCCCAAACTCTGCGGGCTGCA
GCGGGGTGCAACGTACAAGGTGCATTGGTGTTGGCTAAAAATCCCAAACATCTTCAGCCT
CAAATTCCTTGTGACTCTACCCTTTGTAGCACCGTGTAGGGAGCAGGCAGTCAGGAGCAC
AGTAGCAAAGCAATACTTTTTAAGTGGAATTTTAAAGTGCATCATCTTTTTGTTTTTTTA
ATCAATATATATGAATATATCCCATTGGAATATGCATGTCCCATTGGAATAAGCAAGGAG
GGGGGAAGGGGTGGGATTTTAGCAGCTGCCCTGGCAGTCATTTCTCTGACGGACCCAGGA
GAATCACTATGTGAGCAGGTGAAGCTGAACAGACCCCACTAGGGCCTTTGTTTAGTTGGG
GTTGACAGAGAAATCTTAATTCAGATGAGGTAGGTAAAAGAAGCATATTGGCATCAGTGC
CAGATATATACAGTCTTGACCATTTCCGAGTCATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGATCATCAGCCCTCATGCTGGCCTGTTGCCATGGCAACACTGACATGGTACGGCTG
CTCCTGGCACACCCGGCATGTGACAGCAGCCTGACTGACAAGGCTGGCCGAACAGCTTTG
TCCATCGTTCTGAAATCACCCGCCCATGTGGAAATTGCAGGGCTGCTGCGGGCCCACGCA
AAGCAGGGCAGGTCCCTGGGGCCATAGGGGCTGCGGAAGAACTGGCAGCTGGGAACAGAA
GGCGCCTTCTTTGGACTCCTCCCTCGCCCTTGGAGAGGGCACGGGTCATAGCCAGGGGGC
CGCCCCTCCAGAGGAGAAACTATGTCAAATATGCACATACATTCCTGCTGTATAATTCTG
CTCATTAGGATGCTTTGTAGTTTTTGCCTTAGGCCAAGCCCCCAAACTCTGCGGGCTGCA
GCGGGGTGCAACGTACAAGGTGCATTGGTGTTGGCTAAAAATCCCAAACATCTTCAGCCT
CAAATTCCTTGTGACTCTACCCTTTGTAGCACCGTGTAGGGAGCAGGCAGTCAGGAGCAC
AGTAGCAAAGCAATACTTTTTAAGTGGAATTTTAAAGTGCATCATCTTTTTGTTTTTTTA
ATCAATATATATGAATATATCCCATTGGAATATGCATGTCCCATTGGAATAAGCAAGGAG
GGGGGAAGGGGTGGGATTTTAGCAGCTGCCCTGGCAGTCATTTCTCTGACGGACCCAGGA
GAATCACTATGTGAGCAGGTGAAGCTGAACAGACCCCACTAGGGCCTTTGTTTAGTTGGG
GTTGACAGAGAAATCTTAATTCAGATGAGGTAGGTAAAAGAAGCATATTGGCATCAGTGC
CAGATATATACAGTCTTGACCATTTCCGAGTCATCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55587344|ref|XP_524724.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55587344|ref|XP_524724.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               101-876, gnl|bosTau2|chr3 (56530219-56529455)
               

               
               101-876, gnl|Hg17|chr1 (62416076-62415309)
               

               
               101-876, gnl|Mm7|chr4 (98149194-98148555)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-876, gnl|bosTau2|chr3 (56530219-56529455)
               

               
               101-876, gnl|Hg17|chr1 (62416076-62415309)
               

               
               101-876, gnl|Mm7|chr4 (98149194-98148555)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cov (0.132153)

	101-876, gnl\|bosTau2\|chr3 (56530219-56529455)
	101-876, gnl\|Hg17\|chr1 (62416076-62415309)
	101-876, gnl\|Mm7\|chr4 (98149194-98148555)