Non-Coding RNA Search

Ss1.1-rcov34b_n18.5

Sequence:


               
               AGGAAGAGACGCAGGCAGGCTGCGGTGACCCAAGCGGCCGCCCCTGCCTCAGGGACCCCT
TCCCCGAGAGACGGCACCATGACCCAGGGAAAGCTCTCTGTGGCTAACAAGGCCCCCGGG
ACAGAGGGGCAGCAGCAGGCGAATGGTGAGAAGAAGGAGGCTCCAGCAGTGCCCTCAGCC
CCGCCTTCCTATGAGGAGGCCACTTCCGGGGAGGGCCTGAAGGCAGGAGCCTTTCCTCCA
GCCCCGCCGGCTGTGCCTCTCCACCCCAGCTGGGCCTACGTGGACCCTAGCAGCGGCTCC
AGCTATGAGAGCGGTTTCCCTGCTGGAGACCATGAGCTCTTCACCACCTTCAGCTGGGAC
GACCAGAAAGTTCGCCGAGTCTTCATCAGAAAGGTCTATACCATTCTGTTGATCCAGCTG
CTGGTGACCTTGGGTGTTGTGGCTCTCTTCACCTTCTGTGATCCCGTGAAGGACTATGTC
CAGGCCAACCCAGGCTGGTACTGGGCATCCTACGCTGTATTCTTTGCGACCTACCTGACC
CTGGCCTGCTGCTCTGGACCCAGGAGGCATTTCCCCTGGAATCTGATCCTGCTGACCATC
TTTACCCTGTCCATGGCCTACCTCACTGGGATGCTGTCCAGTTACTACAACACCACATCC
GTGCTGCTGTGTCTGGGTATCACGGCCCTCGTCTGCCTCTCGGTCACCGTCTTTAGCTTC
CAGACCAAGTTCGACTTCACGTCCTGCCAGGGTGTGCTCTTCGTGCTGCTCATGACCCTC
TTCTTCAGTGGACTCATCCTGGCCATCCTCCTGCCCTTCCAATATGTGCCCTGGCTCCAC
GCAGTGTATGCCGTTCTGGGAGCAGGCGTGTTTACATTGTTCCTGGCATTTGACACCCAG
TTGCTGATGGGTAGCCGGCGCCACTCGCTGAGCCCGGAGGAGTATATTTTTGGCGCCCTC
AACATTTACCTAGACATCATCTATATCTTCACCTTCTTCCTGCAGCTTTTTGGCACCAAC
CGGGAATGAGGAGCCCTTCCCACCCCCTCCTCCCTTCAGAGAATGCCCCCTTGCTGGTCC
TCTGCCCCGCCCTGCGCTCCTGCCAGCCCAGATATAAAGCTAGCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAGAGACGCAGGCAGGCTGCGGTGACCCAAGCGGCCGCCCCTGCCTCAGGGACCCCT
TCCCCGAGAGACGGCACCATGACCCAGGGAAAGCTCTCTGTGGCTAACAAGGCCCCCGGG
ACAGAGGGGCAGCAGCAGGCGAATGGTGAGAAGAAGGAGGCTCCAGCAGTGCCCTCAGCC
CCGCCTTCCTATGAGGAGGCCACTTCCGGGGAGGGCCTGAAGGCAGGAGCCTTTCCTCCA
GCCCCGCCGGCTGTGCCTCTCCACCCCAGCTGGGCCTACGTGGACCCTAGCAGCGGCTCC
AGCTATGAGAGCGGTTTCCCTGCTGGAGACCATGAGCTCTTCACCACCTTCAGCTGGGAC
GACCAGAAAGTTCGCCGAGTCTTCATCAGAAAGGTCTATACCATTCTGTTGATCCAGCTG
CTGGTGACCTTGGGTGTTGTGGCTCTCTTCACCTTCTGTGATCCCGTGAAGGACTATGTC
CAGGCCAACCCAGGCTGGTACTGGGCATCCTACGCTGTATTCTTTGCGACCTACCTGACC
CTGGCCTGCTGCTCTGGACCCAGGAGGCATTTCCCCTGGAATCTGATCCTGCTGACCATC
TTTACCCTGTCCATGGCCTACCTCACTGGGATGCTGTCCAGTTACTACAACACCACATCC
GTGCTGCTGTGTCTGGGTATCACGGCCCTCGTCTGCCTCTCGGTCACCGTCTTTAGCTTC
CAGACCAAGTTCGACTTCACGTCCTGCCAGGGTGTGCTCTTCGTGCTGCTCATGACCCTC
TTCTTCAGTGGACTCATCCTGGCCATCCTCCTGCCCTTCCAATATGTGCCCTGGCTCCAC
GCAGTGTATGCCGTTCTGGGAGCAGGCGTGTTTACATTGTTCCTGGCATTTGACACCCAG
TTGCTGATGGGTAGCCGGCGCCACTCGCTGAGCCCGGAGGAGTATATTTTTGGCGCCCTC
AACATTTACCTAGACATCATCTATATCTTCACCTTCTTCCTGCAGCTTTTTGGCACCAAC
CGGGAATGAGGAGCCCTTCCCACCCCCTCCTCCCTTCAGAGAATGCCCCCTTGCTGGTCC
TCTGCCCCGCCCTGCGCTCCTGCCAGCCCAGATATAAAGCTAGCTGCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               FAIM2_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               FAIM2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               131-290, - strand, RNAz p=0.843592

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               131-290, - strand, RNAz p=0.843592

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               92-290, gnl|bosTau2|chr5 (24959349-24959547)
               

               
               92-290, gnl|Hg17|chr12 (48581377-48581179)
               

               
               92-290, gnl|Mm7|chr15 (99510146-99509945)
               


               
               291-395, gnl|bosTau2|chr5 (24962363-24962467)
               

               
               291-395, gnl|Hg17|chr12 (48578139-48578035)
               

               
               291-395, gnl|Mm7|chr15 (99506516-99506412)
               


               
               728-828, gnl|bosTau2|chr5 (24971194-24971294)
               

               
               728-828, gnl|Hg17|chr12 (48569254-48569154)
               

               
               728-828, gnl|Mm7|chr15 (99497838-99497738)
               


               
               879-1128, gnl|bosTau2|chr5 (23315041-23315294)
               

               
               879-1128, gnl|Hg17|chr12 (48550704-48550455)
               

               
               879-1128, gnl|Mm7|chr15 (99485543-99485292)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-290, gnl|bosTau2|chr5 (24959349-24959547)
               

               
               92-290, gnl|Hg17|chr12 (48581377-48581179)
               

               
               92-290, gnl|Mm7|chr15 (99510146-99509945)
               


               
               291-395, gnl|bosTau2|chr5 (24962363-24962467)
               

               
               291-395, gnl|Hg17|chr12 (48578139-48578035)
               

               
               291-395, gnl|Mm7|chr15 (99506516-99506412)
               


               
               728-828, gnl|bosTau2|chr5 (24971194-24971294)
               

               
               728-828, gnl|Hg17|chr12 (48569254-48569154)
               

               
               728-828, gnl|Mm7|chr15 (99497838-99497738)
               


               
               879-1128, gnl|bosTau2|chr5 (23315041-23315294)
               

               
               879-1128, gnl|Hg17|chr12 (48550704-48550455)
               

               
               879-1128, gnl|Mm7|chr15 (99485543-99485292)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	92-290, gnl\|bosTau2\|chr5 (24959349-24959547)
	92-290, gnl\|Hg17\|chr12 (48581377-48581179)
	92-290, gnl\|Mm7\|chr15 (99510146-99509945)

	291-395, gnl\|bosTau2\|chr5 (24962363-24962467)
	291-395, gnl\|Hg17\|chr12 (48578139-48578035)
	291-395, gnl\|Mm7\|chr15 (99506516-99506412)

	728-828, gnl\|bosTau2\|chr5 (24971194-24971294)
	728-828, gnl\|Hg17\|chr12 (48569254-48569154)
	728-828, gnl\|Mm7\|chr15 (99497838-99497738)

	879-1128, gnl\|bosTau2\|chr5 (23315041-23315294)
	879-1128, gnl\|Hg17\|chr12 (48550704-48550455)
	879-1128, gnl\|Mm7\|chr15 (99485543-99485292)