Non-Coding RNA Search

Ss1.1-rcov35b_g17.5

Sequence:


               
               ACAGCCCTCGTCCTCATCAATGCCAACCGGCCAGGACTCCAAGAGAAAAGGAAAGTAGAA
CAGCTGCAGTACAATCTGGAGCTGGCCTTTCATCATCATCTCTGCAAGACCCATCGCCAA
GGCATCCTGGCCAAGCTGCCACCCAAGGGGAAGCTTCGGAGCCTGTGCAGTCAGCACGTG
GGAAAAGCTGCAAACCTTCCAGCACCTCCACCCCATCGTGGTCCAAGTTGCTTTCCCTCC
ACTCTATAAGGAACTCTTCAGCACTGAAATCGAGTCATCTGATGGGCTGTCCGAGTGACC
TGGAAACAGGAGTCTGTTCCCTTCCCTAGAGCCTGCTGGCTTACTTCCCCCTCGGCCTTT
TCCTTTCCTGTACACCCTGGAAGGTGGTCTCTGCCTGTTTTTGGAGGGGGTGAGGGCGAG
CAAATGCAGAGACTGATTTTCTGCCCACCGGGCTGCCAGGCAGCAGGCCAAGAGCCAGAG
GGTGGGGATAGAGGCACGCTGTCTCCAGCCTCGGCTTTGTCCTGTCTCGTGTCCCATACC
CTGTCACCCCCAGCTTCTGGGAGGCCTGGGGTGGGATACAAGGACCTCTAGGAGGACCTA
GGTGTCCTCAGGACAGCAGGAGGATCCAGGACACACGGGACAAATGGAACTCAACTCTGG
GCTCAGAAGCTAAGAATAGGCCTTTGAAATACCTCATTGCATTTCCCTGGGGGCTTTGGC
TGGGGAGCTGCATCAAGCTCAGGGGCTGGCGGCTGGAGCCCAGAAGGAACTGTATATAAC
ATAAATCTGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCCCTCGTCCTCATCAATGCCAACCGGCCAGGACTCCAAGAGAAAAGGAAAGTAGAA
CAGCTGCAGTACAATCTGGAGCTGGCCTTTCATCATCATCTCTGCAAGACCCATCGCCAA
GGCATCCTGGCCAAGCTGCCACCCAAGGGGAAGCTTCGGAGCCTGTGCAGTCAGCACGTG
GGAAAAGCTGCAAACCTTCCAGCACCTCCACCCCATCGTGGTCCAAGTTGCTTTCCCTCC
ACTCTATAAGGAACTCTTCAGCACTGAAATCGAGTCATCTGATGGGCTGTCCGAGTGACC
TGGAAACAGGAGTCTGTTCCCTTCCCTAGAGCCTGCTGGCTTACTTCCCCCTCGGCCTTT
TCCTTTCCTGTACACCCTGGAAGGTGGTCTCTGCCTGTTTTTGGAGGGGGTGAGGGCGAG
CAAATGCAGAGACTGATTTTCTGCCCACCGGGCTGCCAGGCAGCAGGCCAAGAGCCAGAG
GGTGGGGATAGAGGCACGCTGTCTCCAGCCTCGGCTTTGTCCTGTCTCGTGTCCCATACC
CTGTCACCCCCAGCTTCTGGGAGGCCTGGGGTGGGATACAAGGACCTCTAGGAGGACCTA
GGTGTCCTCAGGACAGCAGGAGGATCCAGGACACACGGGACAAATGGAACTCAACTCTGG
GCTCAGAAGCTAAGAATAGGCCTTTGAAATACCTCATTGCATTTCCCTGGGGGCTTTGGC
TGGGGAGCTGCATCAAGCTCAGGGGCTGGCGGCTGGAGCCCAGAAGGAACTGTATATAAC
ATAAATCTGGAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               293-625, + strand, RNAz p=0.999624
               

               
               625-734, - strand, RNAz p=0.624646

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               293-625, + strand, RNAz p=0.999624
               

               
               625-734, - strand, RNAz p=0.624646

Homologous human UTR: 2 entry(ies)

More info

Homologous human UTR: 2 entry(ies)

Help | Less info


               
               5' of NM_005060, +
               

               
               5' of NM_005060, -

Homologous human UTR: 2 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005060, +
               

               
               5' of NM_005060, -

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               134-792, gnl|bosTau2|chr3 (15032785-15033437)
               

               
               134-792, gnl|canFam2|chr17 (63899083-63899577)
               

               
               134-792, gnl|dasNov1|scaffold_52935 (5991-6524)
               

               
               134-792, gnl|echTel1|scaffold_298458 (961-428)
               

               
               134-792, gnl|hg17|chr1 (148592428-148592933)
               

               
               134-792, gnl|Hg17|chr1 (148593184-148592513)
               

               
               134-792, gnl|loxAfr1|scaffold_2110 (83029-83527)
               

               
               134-792, gnl|mm7|chr3 (94271875-94271386)
               

               
               134-792, gnl|Mm7|chr3 (94271139-94271776)
               

               
               134-792, gnl|monDom2|scaffold_44 (5121671-5122171)
               

               
               134-792, gnl|panTro1|chr1 (130346520-130347025)
               

               
               134-792, gnl|rheMac2|chr1 (130255341-130255846)
               

               
               134-792, gnl|rn3|chr2 (189319656-189319151)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               134-792, gnl|bosTau2|chr3 (15032785-15033437)
               

               
               134-792, gnl|canFam2|chr17 (63899083-63899577)
               

               
               134-792, gnl|dasNov1|scaffold_52935 (5991-6524)
               

               
               134-792, gnl|echTel1|scaffold_298458 (961-428)
               

               
               134-792, gnl|hg17|chr1 (148592428-148592933)
               

               
               134-792, gnl|Hg17|chr1 (148593184-148592513)
               

               
               134-792, gnl|loxAfr1|scaffold_2110 (83029-83527)
               

               
               134-792, gnl|mm7|chr3 (94271875-94271386)
               

               
               134-792, gnl|Mm7|chr3 (94271139-94271776)
               

               
               134-792, gnl|monDom2|scaffold_44 (5121671-5122171)
               

               
               134-792, gnl|panTro1|chr1 (130346520-130347025)
               

               
               134-792, gnl|rheMac2|chr1 (130255341-130255846)
               

               
               134-792, gnl|rn3|chr2 (189319656-189319151)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cli (0.152812)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               cov (0.132153)

	293-625, + strand, RNAz p=0.999624
	625-734, - strand, RNAz p=0.624646

	134-792, gnl\|bosTau2\|chr3 (15032785-15033437)
	134-792, gnl\|canFam2\|chr17 (63899083-63899577)
	134-792, gnl\|dasNov1\|scaffold_52935 (5991-6524)
	134-792, gnl\|echTel1\|scaffold_298458 (961-428)
	134-792, gnl\|hg17\|chr1 (148592428-148592933)
	134-792, gnl\|Hg17\|chr1 (148593184-148592513)
	134-792, gnl\|loxAfr1\|scaffold_2110 (83029-83527)
	134-792, gnl\|mm7\|chr3 (94271875-94271386)
	134-792, gnl\|Mm7\|chr3 (94271139-94271776)
	134-792, gnl\|monDom2\|scaffold_44 (5121671-5122171)
	134-792, gnl\|panTro1\|chr1 (130346520-130347025)
	134-792, gnl\|rheMac2\|chr1 (130255341-130255846)
	134-792, gnl\|rn3\|chr2 (189319656-189319151)