Non-Coding RNA Search

Ss1.1-rcov36b_e22.5

Sequence:


               
               GCGATTAATCCAGTTGAGAGCTGCCGAGCTGAGAGCGCGGTTGGAGATGTCCGAGCTGCC
CGAGCCGCCCGCAGACAGCAGTATCACGCTGACAGGCGCGACGAATGACTACGGCGACGT
CCCGCAATCAGAGGTAGGCGGCGGGAGACGGGAGCCGGCCCTGGCTCAGCCGGAGGCGGC
CAGCGAAGGCTCGATGGCGGGCGCCAGGCAAGGCCTGATGGAGCAGGCCCGGGAGAGTCC
GGGGGCGGCGCCCAGGGGAGCCCGAATGGCAGAGGTCGCTCGATTGTTGGCGGAGCCTGC
GGAGGAAGAGGGTCCTGAGGGCAGACCCCGGTCTAGGCCCGGGAACGGGCCAGGCTTGAA
TGCGTTGCCCTATCTCCGCCTCCGTCACCCACTTGGCATTCTAGGAATTAATTACCAGCA
GTTCCTCCGCCACTATCTGGAACACTACCCCATAGCTCCGGGCAGAATACAGGAGCTGGA
AGGACGCCGCAGGAGGTTTGTGGAAGCCTGCAGAGCAAGGGAAGCGGCGTTTGATGCCGA
ATATCAGCGGAATCCTCAGAGGATGGATTTTGATGTTTTAACGTTTACTGTAGGTCTGAC
TGCATCTGAAATTATCAATCCACTCATAGAAGAACTTGGTTGTGATAAGTATATCAGTAG
AGAATAGCTGAAACTGCTTCAAGAAGAACCAGTGCATTCAAAACTGTGTTAGACCAATCC
TGTAACTTGATTTTTAAAAAGTCAGAGTATGGGAGAATAAGGCATGGCACCGCTTAAAAG
GAAACTTCTCATGAAAAGCATCAGACAAGAAAACATTTCCTTGAAAATGTCCTTTGGATT
TGTGATTGTTCCAGATTCTTTTCCCTGCATCGTGGAAAATGCCTTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGATTAATCCAGTTGAGAGCTGCCGAGCTGAGAGCGCGGTTGGAGATGTCCGAGCTGCC
CGAGCCGCCCGCAGACAGCAGTATCACGCTGACAGGCGCGACGAATGACTACGGCGACGT
CCCGCAATCAGAGGTAGGCGGCGGGAGACGGGAGCCGGCCCTGGCTCAGCCGGAGGCGGC
CAGCGAAGGCTCGATGGCGGGCGCCAGGCAAGGCCTGATGGAGCAGGCCCGGGAGAGTCC
GGGGGCGGCGCCCAGGGGAGCCCGAATGGCAGAGGTCGCTCGATTGTTGGCGGAGCCTGC
GGAGGAAGAGGGTCCTGAGGGCAGACCCCGGTCTAGGCCCGGGAACGGGCCAGGCTTGAA
TGCGTTGCCCTATCTCCGCCTCCGTCACCCACTTGGCATTCTAGGAATTAATTACCAGCA
GTTCCTCCGCCACTATCTGGAACACTACCCCATAGCTCCGGGCAGAATACAGGAGCTGGA
AGGACGCCGCAGGAGGTTTGTGGAAGCCTGCAGAGCAAGGGAAGCGGCGTTTGATGCCGA
ATATCAGCGGAATCCTCAGAGGATGGATTTTGATGTTTTAACGTTTACTGTAGGTCTGAC
TGCATCTGAAATTATCAATCCACTCATAGAAGAACTTGGTTGTGATAAGTATATCAGTAG
AGAATAGCTGAAACTGCTTCAAGAAGAACCAGTGCATTCAAAACTGTGTTAGACCAATCC
TGTAACTTGATTTTTAAAAAGTCAGAGTATGGGAGAATAAGGCATGGCACCGCTTAAAAG
GAAACTTCTCATGAAAAGCATCAGACAAGAAAACATTTCCTTGAAAATGTCCTTTGGATT
TGTGATTGTTCCAGATTCTTTTCCCTGCATCGTGGAAAATGCCTTTCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6ZR61_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6ZR61_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               185-288, + strand, RNAz p=0.550285

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-288, + strand, RNAz p=0.550285

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               185-886, gnl|bosTau2|chr18 (43646417-43647141)
               

               
               185-886, gnl|Hg17|chr19 (44722382-44721596)
               

               
               185-886, gnl|Mm7|chr7 (25202066-25202789)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               185-886, gnl|bosTau2|chr18 (43646417-43647141)
               

               
               185-886, gnl|Hg17|chr19 (44722382-44721596)
               

               
               185-886, gnl|Mm7|chr7 (25202066-25202789)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               gul (0.177588)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	185-886, gnl\|bosTau2\|chr18 (43646417-43647141)
	185-886, gnl\|Hg17\|chr19 (44722382-44721596)
	185-886, gnl\|Mm7\|chr7 (25202066-25202789)