Non-Coding RNA Search

Ss1.1-rcov36b_j16.5

Sequence:


               
               GAACTCCTGTCCTCATGGATAGTAGTCAGGTTCATTAACCACTGAGCCACAATGGGAACT
CCTCTGGTGATACATTGATCATTGACTGTCAGATATGTTGTAAATAGACTCCTTGGTATG
CTCTGTGCCTAGAAGCTTAGGAGAGCATCATTCTCAGGTGCTTGGGCCTGAGTGTGATGG
TGGCTTAAAGGGTGGACTGCCCTGGGTATGTGACCTCTCAGCTGACATCTGCCCAAGTTC
CTGCTCCTGCTTCCTCCACCAGCCACCCAGGGCAGGTTGGGTCAGGCTGTGAGCGGGTGC
TCTGTGCTTTGGGCACCTTTCTCTTTCCAGCCAGTGACAGCCCCCTTCCTTACAGCTTGT
CTTGGCCATTGCTCCCCAGCTTTGTTTCACAGGGCTTGGAGAATTGTGCTGGGATATTGT
AGGTAGATCTCTGCTACGCACAGGGAATAATCAGGTCAGGAACTGACAGTGACATGATGT
CAGGTGTGCTTGTGAGGTGCTCGGAGTGCAGGCTGAGGACACCCAGGGAGAGTGGCCCTG
CCTGCCATCCTCCTTGGGCTTTTGTACATTCACCATCTTGTTGCCCTACTGTCCTTAATG
GTAGTGAGGATGGGTGACAGCACCCAATACTGACATTGTTCTGGTGGCCTGTCCTTGACA
TGCCAAGATACTTATTAAACCACAGCACTGTGCTGTTTGGGGCCTGTGTTGTAGCCTGAT
TTGGTGGTGTGTAGATGAGGCCCCTTCCAGGCATGCTTTCCATGGAGGTTCTGAAGGAAT
GGAGTGAGGGCATCACTCACAGAAGTGGGAGACTCTGCTCAGGTTTGGGAGGCCCGGCAG
CGCTTCACAAGAGCCATGTCCCAACTGGTCACACCCTCCACCAGAAGCAGTGCTGCCCTG
GGCCCAGTTTGCACCAGCTTGGACGGAGCTTCTTCCAGGAGCAGCAGCAGAATCATCAGG
CCAGCCCACCCCATGCGCCCTGCCCGCCTGGCCTGCCGTTTATCTCCCACCCCCACCTCC
TGGGTGGCACACGTGTTTGAAGCAGTAAAGAATGTGTGTTTCCTTCCCTTCTGGAATACA
TAAACGACCCAGTTTTCCCAGACGCCCTCCTCCTTCCTTAGACTCTGCCCTCCGCGGAGG
TGTGGAGAGGCTAGAGATGAAAGCTCTGTAGTGAGGGCTGACAAAGATCTTTCATAATAA
ACATCTTGACGTAAGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTCCTGTCCTCATGGATAGTAGTCAGGTTCATTAACCACTGAGCCACAATGGGAACT
CCTCTGGTGATACATTGATCATTGACTGTCAGATATGTTGTAAATAGACTCCTTGGTATG
CTCTGTGCCTAGAAGCTTAGGAGAGCATCATTCTCAGGTGCTTGGGCCTGAGTGTGATGG
TGGCTTAAAGGGTGGACTGCCCTGGGTATGTGACCTCTCAGCTGACATCTGCCCAAGTTC
CTGCTCCTGCTTCCTCCACCAGCCACCCAGGGCAGGTTGGGTCAGGCTGTGAGCGGGTGC
TCTGTGCTTTGGGCACCTTTCTCTTTCCAGCCAGTGACAGCCCCCTTCCTTACAGCTTGT
CTTGGCCATTGCTCCCCAGCTTTGTTTCACAGGGCTTGGAGAATTGTGCTGGGATATTGT
AGGTAGATCTCTGCTACGCACAGGGAATAATCAGGTCAGGAACTGACAGTGACATGATGT
CAGGTGTGCTTGTGAGGTGCTCGGAGTGCAGGCTGAGGACACCCAGGGAGAGTGGCCCTG
CCTGCCATCCTCCTTGGGCTTTTGTACATTCACCATCTTGTTGCCCTACTGTCCTTAATG
GTAGTGAGGATGGGTGACAGCACCCAATACTGACATTGTTCTGGTGGCCTGTCCTTGACA
TGCCAAGATACTTATTAAACCACAGCACTGTGCTGTTTGGGGCCTGTGTTGTAGCCTGAT
TTGGTGGTGTGTAGATGAGGCCCCTTCCAGGCATGCTTTCCATGGAGGTTCTGAAGGAAT
GGAGTGAGGGCATCACTCACAGAAGTGGGAGACTCTGCTCAGGTTTGGGAGGCCCGGCAG
CGCTTCACAAGAGCCATGTCCCAACTGGTCACACCCTCCACCAGAAGCAGTGCTGCCCTG
GGCCCAGTTTGCACCAGCTTGGACGGAGCTTCTTCCAGGAGCAGCAGCAGAATCATCAGG
CCAGCCCACCCCATGCGCCCTGCCCGCCTGGCCTGCCGTTTATCTCCCACCCCCACCTCC
TGGGTGGCACACGTGTTTGAAGCAGTAAAGAATGTGTGTTTCCTTCCCTTCTGGAATACA
TAAACGACCCAGTTTTCCCAGACGCCCTCCTCCTTCCTTAGACTCTGCCCTCCGCGGAGG
TGTGGAGAGGCTAGAGATGAAAGCTCTGTAGTGAGGGCTGACAAAGATCTTTCATAATAA
ACATCTTGACGTAAGAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               586-705, + strand, RNAz p=0.647822

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               586-705, + strand, RNAz p=0.647822

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015289, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015289, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               63-504, gnl|bosTau2|chr10 (17021413-17020976)
               

               
               63-504, gnl|Hg17|chr15 (40239579-40239083)
               

               
               63-504, gnl|Mm7|chr2 (120058279-120057825)
               


               
               507-1218, gnl|bosTau2|chr10 (17020844-17020129)
               

               
               507-1218, gnl|Hg17|chr15 (40238958-40238200)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-504, gnl|bosTau2|chr10 (17021413-17020976)
               

               
               63-504, gnl|Hg17|chr15 (40239579-40239083)
               

               
               63-504, gnl|Mm7|chr2 (120058279-120057825)
               


               
               507-1218, gnl|bosTau2|chr10 (17020844-17020129)
               

               
               507-1218, gnl|Hg17|chr15 (40238958-40238200)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cov (0.264306)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)

	63-504, gnl\|bosTau2\|chr10 (17021413-17020976)
	63-504, gnl\|Hg17\|chr15 (40239579-40239083)
	63-504, gnl\|Mm7\|chr2 (120058279-120057825)

	507-1218, gnl\|bosTau2\|chr10 (17020844-17020129)
	507-1218, gnl\|Hg17\|chr15 (40238958-40238200)

	cov (0.264306)
	ecc (0.23007)
	fcc (0.197785)
	duo (0.172801)
	cki (0.165235)
	pty (0.142714)
	pla (0.133672)
	nbm (0.0993246)