Non-Coding RNA Search

Ss1.1-rcov36b_n18.5

Sequence:


               
               GAAAGTCTCCGTGCTGTGGTCCACTGGGGCCACCAGATCCTTTCCCTCATCTGACTGCTT
ACCCTTCATGGAGAATGAAGGAAGATTTGGAATTTATTTCTGTGACCCATCAGCTTAACC
AGACTTCTGATACTTCAGTCCTTTCTTTGAGCTGAATCAGGACGTGGCAGAGCACCAAGC
ACAGAAAATGACCGTAAGACATGGTCTTGGTTATCCAGAGCTCCATGATAGCATGAGGAA
GGGATTAAAAGTAACAGCACAATATCAACCGACTGGAAACTGATGGGAGGAAGAGGAGGA
ATCANACACAAAGGTTTTCTGCAGGGGGTGAGGGGGAAGGAATCCAGTGGCTTGTGAGAA
ATGCAGTTTCTGAGGTTAAATCCCCTCTTCTCAAGGATGAGGTTTTCAGGGGGAGAATAA
GGAGGAGCTTGGCAGTTCTCTGACCAGCTCCTCTGTCCTGTAGGACAGAATCTCACCGAC
CCCCTTCCCCAGCCCTCTTTCCGCGGCATCTGAGACAGGTCCGGGATCTGCCCCTAGGGG
GCGCTCCACCCACCGTACCCGACCTGGGGAGCACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGTCTCCGTGCTGTGGTCCACTGGGGCCACCAGATCCTTTCCCTCATCTGACTGCTT
ACCCTTCATGGAGAATGAAGGAAGATTTGGAATTTATTTCTGTGACCCATCAGCTTAACC
AGACTTCTGATACTTCAGTCCTTTCTTTGAGCTGAATCAGGACGTGGCAGAGCACCAAGC
ACAGAAAATGACCGTAAGACATGGTCTTGGTTATCCAGAGCTCCATGATAGCATGAGGAA
GGGATTAAAAGTAACAGCACAATATCAACCGACTGGAAACTGATGGGAGGAAGAGGAGGA
ATCANACACAAAGGTTTTCTGCAGGGGGTGAGGGGGAAGGAATCCAGTGGCTTGTGAGAA
ATGCAGTTTCTGAGGTTAAATCCCCTCTTCTCAAGGATGAGGTTTTCAGGGGGAGAATAA
GGAGGAGCTTGGCAGTTCTCTGACCAGCTCCTCTGTCCTGTAGGACAGAATCTCACCGAC
CCCCTTCCCCAGCCCTCTTTCCGCGGCATCTGAGACAGGTCCGGGATCTGCCCCTAGGGG
GCGCTCCACCCACCGTACCCGACCTGGGGAGCACCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               138-549, + strand, RNAz p=0.983803

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               138-549, + strand, RNAz p=0.983803

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-576, gnl|bosTau2|chr18 (50870915-50871501)
               

               
               3-576, gnl|Hg17|chr19 (56802585-56803208)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-576, gnl|bosTau2|chr18 (50870915-50871501)
               

               
               3-576, gnl|Hg17|chr19 (56802585-56803208)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	3-576, gnl\|bosTau2\|chr18 (50870915-50871501)
	3-576, gnl\|Hg17\|chr19 (56802585-56803208)