Non-Coding RNA Search

Ss1.1-rcov37b_p2.5

Sequence:


               
               GGGTCACTGTGGTTTAGGTTTTTTTCTCCCCATTCCACTTAAGGTGAAGGGGCAAGGGAG
GAACCCAGGTCCCAGCCCCCGAATTAGATCTGTATGCTCAGCGGCCTGGCTGATGCTCAG
AGGCCTGCTGAGAGGATACTCACTCCCCTGCTACTGGCTGGACACTTATTTCTGAGCTCA
AGTCACTGCAGTGAGAGTGTGCTCCCCCGAGGGACACTGCTCTCCATCAGGACGGTGGTA
CTTTTTGGGGAACATAGTAGTCAGGGGTATTGGTTCCCTTTTGAGGGGATGCTGCTGTGT
GCTTCTAGGTATGGGTGCTCAGAGGCCCTCAGTGATAGATCCCTTCCCTTCCTTCCTCCC
TTTATCGTCCCCCTGGAGCTCCAAGTCAGGCAGCTAGGAGAGTTAGATGGTCATCCTCCT
CTTTTGCTAAGCCATGATTTGATTCGTCTTTTTCTAAGCAAGCTTGTCCTTGGGTTCTGC
AGAGCAGGCCTGCTCCCTCTGCCCCAGCCTATCCTCATTTCTTGAGGCCCAATCCTCAAT
GCTCCAAAATATTGCTTGTGAAATTTAAGAATGTGAACGCGAGGTGGCAGTGGGCCTCTT
CTACATTACTTTGGGCCATGGGGTCAGCTGACCGGGAGGGTGAGCCCTTCTGTATCTCAT
GGTCTCACTGAATCTTTGGGAGCTGCCTGGTTATCTCTGGTGCTGCTAACCCCTGGCTCC
ACTTGCCAATTCGCCTGAGCAATGAGCAAAGCAATACCATATCTTACCCGTTTCCACGTT
CCTCTTCCTTCCCCTGCTCCTCCTTGGGAGAAGCAATAATTCCATGGGCGATGTCAGAGT
AGCACTTTACAAATGGCTCAGTGGCATTCATCCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTCACTGTGGTTTAGGTTTTTTTCTCCCCATTCCACTTAAGGTGAAGGGGCAAGGGAG
GAACCCAGGTCCCAGCCCCCGAATTAGATCTGTATGCTCAGCGGCCTGGCTGATGCTCAG
AGGCCTGCTGAGAGGATACTCACTCCCCTGCTACTGGCTGGACACTTATTTCTGAGCTCA
AGTCACTGCAGTGAGAGTGTGCTCCCCCGAGGGACACTGCTCTCCATCAGGACGGTGGTA
CTTTTTGGGGAACATAGTAGTCAGGGGTATTGGTTCCCTTTTGAGGGGATGCTGCTGTGT
GCTTCTAGGTATGGGTGCTCAGAGGCCCTCAGTGATAGATCCCTTCCCTTCCTTCCTCCC
TTTATCGTCCCCCTGGAGCTCCAAGTCAGGCAGCTAGGAGAGTTAGATGGTCATCCTCCT
CTTTTGCTAAGCCATGATTTGATTCGTCTTTTTCTAAGCAAGCTTGTCCTTGGGTTCTGC
AGAGCAGGCCTGCTCCCTCTGCCCCAGCCTATCCTCATTTCTTGAGGCCCAATCCTCAAT
GCTCCAAAATATTGCTTGTGAAATTTAAGAATGTGAACGCGAGGTGGCAGTGGGCCTCTT
CTACATTACTTTGGGCCATGGGGTCAGCTGACCGGGAGGGTGAGCCCTTCTGTATCTCAT
GGTCTCACTGAATCTTTGGGAGCTGCCTGGTTATCTCTGGTGCTGCTAACCCCTGGCTCC
ACTTGCCAATTCGCCTGAGCAATGAGCAAAGCAATACCATATCTTACCCGTTTCCACGTT
CCTCTTCCTTCCCCTGCTCCTCCTTGGGAGAAGCAATAATTCCATGGGCGATGTCAGAGT
AGCACTTTACAAATGGCTCAGTGGCATTCATCCCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-233, - strand, RNAz p=0.823804

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-233, - strand, RNAz p=0.823804

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-876, gnl|bosTau2|chr19 (38802163-38803040)
               

               
               1-876, gnl|Hg17|chr17 (37987338-37985865)
               

               
               1-876, gnl|Mm7|chr11 (101207185-101206346)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr19 (38802163-38803040)
               

               
               1-876, gnl|Hg17|chr17 (37987338-37985865)
               

               
               1-876, gnl|Mm7|chr11 (101207185-101206346)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               cov (0.264306)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cov (0.264306)
               

               
               cly (0.120642)

	1-876, gnl\|bosTau2\|chr19 (38802163-38803040)
	1-876, gnl\|Hg17\|chr17 (37987338-37985865)
	1-876, gnl\|Mm7\|chr11 (101207185-101206346)