Non-Coding RNA Search

Ss1.1-rcov38b_i1.5

Sequence:


               
               TCTGAGGAACTCCATAAGGGGAGAGGAGGAGGGGCAGGCTTTCTATCCCAGGAACATTCC
ATTCCACCTGCTCAGACCAGTGGGGATCCTAGCCAAGGACAGAGGCCCAAGGGAGCTCAC
CCCAGGGGCCCCCACCCCTTCCAGGGAGGGAGCCAGGGGAGCCCATTCCAAAATATGGCC
AAGGATTATGAACTTCACAATGGCCGACGGCGCCACCCACGCGGACGGACAGACTGGCCG
ACCACAGGAAGAGAGTTGGGGGGCCGGGGGCCCAGTAAAGGAGGCTGAACTGAGCTCCTC
CCAGCTCCTCAGTGCCCCGACTCTGGACCTGACTCCTGGATTCTGCTCCTTTCCTGGGCA
CCTCCTTCAGGAAGTCGTCTCAAATCCACCCTGCTCAAGCCCGGCGCCCTCCTCCCATCA
CAGGAGCCCTTCACTTTAGAGTGGCGAGGGGCGGGATTGCGGGGAAGGTGCCTGTACTCT
GAATGTCCTTATGTGTGACACATCTGACTTTGGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGAGGAACTCCATAAGGGGAGAGGAGGAGGGGCAGGCTTTCTATCCCAGGAACATTCC
ATTCCACCTGCTCAGACCAGTGGGGATCCTAGCCAAGGACAGAGGCCCAAGGGAGCTCAC
CCCAGGGGCCCCCACCCCTTCCAGGGAGGGAGCCAGGGGAGCCCATTCCAAAATATGGCC
AAGGATTATGAACTTCACAATGGCCGACGGCGCCACCCACGCGGACGGACAGACTGGCCG
ACCACAGGAAGAGAGTTGGGGGGCCGGGGGCCCAGTAAAGGAGGCTGAACTGAGCTCCTC
CCAGCTCCTCAGTGCCCCGACTCTGGACCTGACTCCTGGATTCTGCTCCTTTCCTGGGCA
CCTCCTTCAGGAAGTCGTCTCAAATCCACCCTGCTCAAGCCCGGCGCCCTCCTCCCATCA
CAGGAGCCCTTCACTTTAGAGTGGCGAGGGGCGGGATTGCGGGGAAGGTGCCTGTACTCT
GAATGTCCTTATGTGTGACACATCTGACTTTGGCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               92-205, - strand, RNAz p=0.999419

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               92-205, - strand, RNAz p=0.999419

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               143-208, - strand, RNAmicro p=0.915118

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               143-208, - strand, RNAmicro p=0.915118

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-205, gnl|bosTau2|chr2 (79346307-79346102)
               

               
               4-205, gnl|Hg17|chr1 (27010206-27010387)
               

               
               4-205, gnl|Mm7|chr4 (132870527-132870352)
               


               
               293-516, gnl|bosTau2|chr2 (79346006-79345791)
               

               
               293-516, gnl|Hg17|chr1 (27010478-27010698)
               

               
               293-516, gnl|Mm7|chr4 (132870265-132870062)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-205, gnl|bosTau2|chr2 (79346307-79346102)
               

               
               4-205, gnl|Hg17|chr1 (27010206-27010387)
               

               
               4-205, gnl|Mm7|chr4 (132870527-132870352)
               


               
               293-516, gnl|bosTau2|chr2 (79346006-79345791)
               

               
               293-516, gnl|Hg17|chr1 (27010478-27010698)
               

               
               293-516, gnl|Mm7|chr4 (132870265-132870062)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ton (0.1755)
               

               
               ste (0.135208)
               

               
               cov (0.132153)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               ste (0.135208)
               

               
               cov (0.132153)

	4-205, gnl\|bosTau2\|chr2 (79346307-79346102)
	4-205, gnl\|Hg17\|chr1 (27010206-27010387)
	4-205, gnl\|Mm7\|chr4 (132870527-132870352)

	293-516, gnl\|bosTau2\|chr2 (79346006-79345791)
	293-516, gnl\|Hg17\|chr1 (27010478-27010698)
	293-516, gnl\|Mm7\|chr4 (132870265-132870062)