Ss1.1-rcov39b_c11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACAGAAAAGAACCGGCACTGTCTCCTGGACATCGCCCCCCACGCCATCGAGCGGCTGCA CCACATGCACATCTACCCCATCGTCATCTTCATCCACTATAAGAGCGCCAAACACATCAA GGAGCAGAGAGATCCCATCTACCTGAAGGACAAGGTGACTCAGAGACATTCCAAAGAGCA GTTTGAGACTGCTCAGAAGATTGAACAGGAGTACAGCAGATACTTCACAGGAGTCGTCCA GGGAGGAGCCCTGTCGAGCATTTGCACTCAGATCTTGGCAATGGTTAATCAAGAGCAAAA TAAAGTCCTGTGGATCCCAGCCTGCCCTCTATAGAACACGGTACTGGAGACAACTGCAAG CTCAGCCGCCAGCATGACCACCTGGTTCAGCTCTTTTTTAGTGACTAAAGATAGAAGCCT CTCTCTATATAAACATGAAGGGGAAGGATCCATGGACTAGGACTCCAGAAGCACCTCCTT TGTAGACAGAGGGCCACAGATGAATGGGATCCAGGCCCTGGCCAGCAGACTGCGTTCCCC TCACATATGTGCTTTAAGACAAAGGACTTTGAGAGGGGTTCAGCACCAACCTTTCTTGTA GCCAGCTGATCAGAGATGCTGCAAAGAAAACCTTTCAGATCACAAGTTTACAAGCCTTTT CTAAGTATTTGGTTGTTTATGTTTACTTGAATCGCTCCATGTTGTTGCTGCCCAGCTCCT GCCCTTTCGTCACTGTTGCTTTGGTGTTGGTTTTGTGCCTGTTTTCAGCAAAACCACTCT GGAACCTCGCTGGGGGCTGCTTTGCTTTGGGAGGTTCTTGTTGACGGGACCAGAGCTTTG ACAAACTTCCTGCTCCTTGGTGGTGCCTCTCCTGGAAGGGCCTGGCGACTGCACATGCTT CAACCAGTGTAGTGGGCACGGAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACAGAAAAGAACCGGCACTGTCTCCTGGACATCGCCCCCCACGCCATCGAGCGGCTGCA CCACATGCACATCTACCCCATCGTCATCTTCATCCACTATAAGAGCGCCAAACACATCAA GGAGCAGAGAGATCCCATCTACCTGAAGGACAAGGTGACTCAGAGACATTCCAAAGAGCA GTTTGAGACTGCTCAGAAGATTGAACAGGAGTACAGCAGATACTTCACAGGAGTCGTCCA GGGAGGAGCCCTGTCGAGCATTTGCACTCAGATCTTGGCAATGGTTAATCAAGAGCAAAA TAAAGTCCTGTGGATCCCAGCCTGCCCTCTATAGAACACGGTACTGGAGACAACTGCAAG CTCAGCCGCCAGCATGACCACCTGGTTCAGCTCTTTTTTAGTGACTAAAGATAGAAGCCT CTCTCTATATAAACATGAAGGGGAAGGATCCATGGACTAGGACTCCAGAAGCACCTCCTT TGTAGACAGAGGGCCACAGATGAATGGGATCCAGGCCCTGGCCAGCAGACTGCGTTCCCC TCACATATGTGCTTTAAGACAAAGGACTTTGAGAGGGGTTCAGCACCAACCTTTCTTGTA GCCAGCTGATCAGAGATGCTGCAAAGAAAACCTTTCAGATCACAAGTTTACAAGCCTTTT CTAAGTATTTGGTTGTTTATGTTTACTTGAATCGCTCCATGTTGTTGCTGCCCAGCTCCT GCCCTTTCGTCACTGTTGCTTTGGTGTTGGTTTTGTGCCTGTTTTCAGCAAAACCACTCT GGAACCTCGCTGGGGGCTGCTTTGCTTTGGGAGGTTCTTGTTGACGGGACCAGAGCTTTG ACAAACTTCCTGCTCCTTGGTGGTGCCTCTCCTGGAAGGGCCTGGCGACTGCACATGCTT CAACCAGTGTAGTGGGCACGGAAC |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 9-121, gnl|bosTau2|chr28 (26486856-26486744) | |
| 9-121, gnl|canFam2|chr4 (30901137-30901276) | |
| 9-121, gnl|danRer3|chr9 (2077662-2077784) | |
| 9-121, gnl|dasNov1|scaffold_66 (212829-212690) | |
| 9-121, gnl|echTel1|scaffold_266498 (6086-6224) | |
| 9-121, gnl|fr1|chrUn (59428124-59427999) | |
| 9-121, gnl|galGal2|chr6 (12545554-12545432) | |
| 9-121, gnl|hg17|chr10 (79224591-79224730) | |
| 9-121, gnl|Hg17|chr10 (79224724-79224612) | |
| 9-121, gnl|loxAfr1|scaffold_35263 (25053-25187) | |
| 9-121, gnl|mm7|chr14 (21799768-21799907) | |
| 9-121, gnl|Mm7|chr14 (21799901-21799789) | |
| 9-121, gnl|monDom2|scaffold_14 (6409857-6409991) | |
| 9-121, gnl|panTro1|chr8 (80503048-80503188) | |
| 9-121, gnl|rheMac2|chr9 (59258154-59258015) | |
| 9-121, gnl|rn3|chr15 (204546-204407) | |
| 9-121, gnl|tetNig1|chr17 (6162105-6161971) | |
| 9-121, gnl|xenTro1|scaffold_249 (1133479-1133601) | |
| 228-924, gnl|bosTau2|chr28 (26484513-26483821) | |
| 228-924, gnl|canFam2|chr4 (30898170-30898891) | |
| 228-924, gnl|dasNov1|scaffold_66 (215883-215188) | |
| 228-924, gnl|echTel1|scaffold_266498 (2840-3492) | |
| 228-924, gnl|galGal2|chr6 (12550516-12549847) | |
| 228-924, gnl|hg17|chr10 (79221485-79222168) | |
| 228-924, gnl|Hg17|chr10 (79222310-79221606) | |
| 228-924, gnl|loxAfr1|scaffold_35263 (21636-22278) | |
| 228-924, gnl|mm7|chr14 (21797524-21798195) | |
| 228-924, gnl|Mm7|chr14 (21798336-21797657) | |
| 228-924, gnl|monDom2|scaffold_14 (6406324-6407110) | |
| 228-924, gnl|oryCun1|scaffold_100649 (2252-1656) | |
| 228-924, gnl|panTro1|chr8 (80499957-80500639) | |
| 228-924, gnl|rheMac2|chr9 (59261231-59260549) | |
| 228-924, gnl|rn3|chr15 (206963-206291) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-121, gnl|bosTau2|chr28 (26486856-26486744) | |
| 9-121, gnl|canFam2|chr4 (30901137-30901276) | |
| 9-121, gnl|danRer3|chr9 (2077662-2077784) | |
| 9-121, gnl|dasNov1|scaffold_66 (212829-212690) | |
| 9-121, gnl|echTel1|scaffold_266498 (6086-6224) | |
| 9-121, gnl|fr1|chrUn (59428124-59427999) | |
| 9-121, gnl|galGal2|chr6 (12545554-12545432) | |
| 9-121, gnl|hg17|chr10 (79224591-79224730) | |
| 9-121, gnl|Hg17|chr10 (79224724-79224612) | |
| 9-121, gnl|loxAfr1|scaffold_35263 (25053-25187) | |
| 9-121, gnl|mm7|chr14 (21799768-21799907) | |
| 9-121, gnl|Mm7|chr14 (21799901-21799789) | |
| 9-121, gnl|monDom2|scaffold_14 (6409857-6409991) | |
| 9-121, gnl|panTro1|chr8 (80503048-80503188) | |
| 9-121, gnl|rheMac2|chr9 (59258154-59258015) | |
| 9-121, gnl|rn3|chr15 (204546-204407) | |
| 9-121, gnl|tetNig1|chr17 (6162105-6161971) | |
| 9-121, gnl|xenTro1|scaffold_249 (1133479-1133601) | |
| 228-924, gnl|bosTau2|chr28 (26484513-26483821) | |
| 228-924, gnl|canFam2|chr4 (30898170-30898891) | |
| 228-924, gnl|dasNov1|scaffold_66 (215883-215188) | |
| 228-924, gnl|echTel1|scaffold_266498 (2840-3492) | |
| 228-924, gnl|galGal2|chr6 (12550516-12549847) | |
| 228-924, gnl|hg17|chr10 (79221485-79222168) | |
| 228-924, gnl|Hg17|chr10 (79222310-79221606) | |
| 228-924, gnl|loxAfr1|scaffold_35263 (21636-22278) | |
| 228-924, gnl|mm7|chr14 (21797524-21798195) | |
| 228-924, gnl|Mm7|chr14 (21798336-21797657) | |
| 228-924, gnl|monDom2|scaffold_14 (6406324-6407110) | |
| 228-924, gnl|oryCun1|scaffold_100649 (2252-1656) | |
| 228-924, gnl|panTro1|chr8 (80499957-80500639) | |
| 228-924, gnl|rheMac2|chr9 (59261231-59260549) | |
| 228-924, gnl|rn3|chr15 (206963-206291) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) | |
| eep (0.122564) |