Non-Coding RNA Search

Ss1.1-rcov39b_d8.5

Sequence:


               
               GAAGGTGACAGCAGTCGGTGGGATGGAGCATCCCCCAAAGTTTTACAATGTGGCCGAGGA
CTTTGATTGTACATTGTTCTTTTTTTTTTTTTTTTTTTTTAAATAGTCATTCCAAGTATC
ATGAGATGCATGGTTACAGGAAGTCCCGGCCTTCCCAAAAGCTGCCCCGCCTCCCCCTGA
GGAGAAGGGCCAGTCCTCGCCCAGGTCCACCCAAGGAGGGCAGTAGCATCGCTTTAGTGT
AAATTATGTACTCCAACATTTTTTTTAATCTTCGCCTTAATACTGGTTCTTTTGGTTGGT
TTTATTTGGAGTGGTCAGCCATCACAATCCCCTTTTTGGTCCCGCAACTGGAAGTATGAA
GGCTTTGGGTCCCCCTAGGAGCGGGTTGAGGTGCGGAGGCAGCCAGGGCTTACCGGTACA
CGGACTGGAGACCAGTTCAATAAAGGGCACACCTTAAAGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGTGACAGCAGTCGGTGGGATGGAGCATCCCCCAAAGTTTTACAATGTGGCCGAGGA
CTTTGATTGTACATTGTTCTTTTTTTTTTTTTTTTTTTTTAAATAGTCATTCCAAGTATC
ATGAGATGCATGGTTACAGGAAGTCCCGGCCTTCCCAAAAGCTGCCCCGCCTCCCCCTGA
GGAGAAGGGCCAGTCCTCGCCCAGGTCCACCCAAGGAGGGCAGTAGCATCGCTTTAGTGT
AAATTATGTACTCCAACATTTTTTTTAATCTTCGCCTTAATACTGGTTCTTTTGGTTGGT
TTTATTTGGAGTGGTCAGCCATCACAATCCCCTTTTTGGTCCCGCAACTGGAAGTATGAA
GGCTTTGGGTCCCCCTAGGAGCGGGTTGAGGTGCGGAGGCAGCCAGGGCTTACCGGTACA
CGGACTGGAGACCAGTTCAATAAAGGGCACACCTTAAAGAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               77-189, - strand, RNAz p=0.833663

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-189, - strand, RNAz p=0.833663

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-458, gnl|bosTau2|chr1 (93218367-93217914)
               

               
               1-458, gnl|Hg17|chr7 (5340463-5340025)
               

               
               1-458, gnl|Mm7|chr5 (141936498-141936032)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-458, gnl|bosTau2|chr1 (93218367-93217914)
               

               
               1-458, gnl|Hg17|chr7 (5340463-5340025)
               

               
               1-458, gnl|Mm7|chr5 (141936498-141936032)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cov (0.264306)
               

               
               mcp (0.170648)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               mcp (0.170648)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	1-458, gnl\|bosTau2\|chr1 (93218367-93217914)
	1-458, gnl\|Hg17\|chr7 (5340463-5340025)
	1-458, gnl\|Mm7\|chr5 (141936498-141936032)

	cov (0.264306)
	mcp (0.170648)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	ecc (0.115035)
	jca (0.11396)