Ss1.1-rcov39b_e20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAACTATGGCAGGGGGCGGGCAGCTGGCGCTGCGAACGCTGTCTGGACACGGTTGGGTG AGGGGCTCGGGTCCGGCTCTCCTTAGCCGCCTGCGGGACGCCGCTGTGGTGCGGCCCGGC TTCCTGAGCGCGGCCGAAGAGGAGACACTGAGCCGCGAGTTGGAACCTGAGCTACGCCGT CGCCGATACGAATACGACCACTGGGACGCGGCCATCCATGGCTTCCGAGAGACTGAGAAG TCACGCTGGTCAGAGGCAAGCAGGGTCATCCTGCAGCGTGTGCAGGCGGCCGCTTTTGGC CCTGGCCAGAGCCTGCTCTCCTCAGTGCACGTGCTGGACCTGGAACCTCGGGGCTACATC AAGCCACACGTAGACAGCATCAAGTTCTGCGGATCCACCATTGCCGGCCTGTCCCTGCTG TCTCCCAGTGTCATGCGGCTGGTGCACACTCAGGAGCCAGGGGAGTGGCTGGAACTCCTG CTGGAGCCAGGCTCCCTCTACATTCTTAGGGACTCGGCCCGTTACGACTTCTCCCATGAG ATCCTTCGGGATGAAGAATCCTTTTTTGGAGAGCGTCGGATTCCCCGAGGCCGACGCATC TCAGTGATCTGCCGCTCCCTCCCTGAGGGTATGGGATCAGGGGAGCCCCGGCAGCCACCC CCAGCCTGCTGACCTTCTCGAAGCTTCATAAGACACCTGTGTTTAGTGGATAAAGTTGGA GAATGGACAAGCTGGCCTTCCTGCCTGTTGGTGGGGGGCTGGAGTTGCAGGGGAAGCCCA GGACCCCACCACACCCACCAGGAGCTCCCCCAGCTCAACACATAGTCATGGGGCCAGAGG AGCAGTTTCCTTTATTGTGCCCCTTGCTGGCAGCCCCAGCCCACCTCCCCTTCTCTTCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAACTATGGCAGGGGGCGGGCAGCTGGCGCTGCGAACGCTGTCTGGACACGGTTGGGTG AGGGGCTCGGGTCCGGCTCTCCTTAGCCGCCTGCGGGACGCCGCTGTGGTGCGGCCCGGC TTCCTGAGCGCGGCCGAAGAGGAGACACTGAGCCGCGAGTTGGAACCTGAGCTACGCCGT CGCCGATACGAATACGACCACTGGGACGCGGCCATCCATGGCTTCCGAGAGACTGAGAAG TCACGCTGGTCAGAGGCAAGCAGGGTCATCCTGCAGCGTGTGCAGGCGGCCGCTTTTGGC CCTGGCCAGAGCCTGCTCTCCTCAGTGCACGTGCTGGACCTGGAACCTCGGGGCTACATC AAGCCACACGTAGACAGCATCAAGTTCTGCGGATCCACCATTGCCGGCCTGTCCCTGCTG TCTCCCAGTGTCATGCGGCTGGTGCACACTCAGGAGCCAGGGGAGTGGCTGGAACTCCTG CTGGAGCCAGGCTCCCTCTACATTCTTAGGGACTCGGCCCGTTACGACTTCTCCCATGAG ATCCTTCGGGATGAAGAATCCTTTTTTGGAGAGCGTCGGATTCCCCGAGGCCGACGCATC TCAGTGATCTGCCGCTCCCTCCCTGAGGGTATGGGATCAGGGGAGCCCCGGCAGCCACCC CCAGCCTGCTGACCTTCTCGAAGCTTCATAAGACACCTGTGTTTAGTGGATAAAGTTGGA GAATGGACAAGCTGGCCTTCCTGCCTGTTGGTGGGGGGCTGGAGTTGCAGGGGAAGCCCA GGACCCCACCACACCCACCAGGAGCTCCCCCAGCTCAACACATAGTCATGGGGCCAGAGG AGCAGTTTCCTTTATTGTGCCCCTTGCTGGCAGCCCCAGCCCACCTCCCCTTCTCTTCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 508-626, + strand, RNAz p=0.797701 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 508-626, + strand, RNAz p=0.797701 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 210-393, gnl|bosTau2|chr7 (13982965-13982782) | |
| 210-393, gnl|canFam2|chr20 (56729730-56729524) | |
| 210-393, gnl|danRer3|chr3 (31724992-31724784) | |
| 210-393, gnl|dasNov1|scaffold_173319 (4274-4081) | |
| 210-393, gnl|echTel1|scaffold_308194 (5939-5734) | |
| 210-393, gnl|fr1|chrUn (157565115-157565319) | |
| 210-393, gnl|hg17|chr19 (6325203-6325409) | |
| 210-393, gnl|Hg17|chr19 (6325213-6325396) | |
| 210-393, gnl|loxAfr1|scaffold_145646 (1502-1298) | |
| 210-393, gnl|mm7|chr17 (55209508-55209714) | |
| 210-393, gnl|Mm7|chr17 (55209518-55209701) | |
| 210-393, gnl|oryCun1|scaffold_76580 (217-422) | |
| 210-393, gnl|panTro1|chr20 (6683358-6683564) | |
| 210-393, gnl|rheMac2|chr19 (6277390-6277596) | |
| 210-393, gnl|rn3|chrUn (24765649-24765437) | |
| 210-393, gnl|tetNig1|chr3 (8233562-8233749) | |
| 210-393, gnl|xenTro1|scaffold_781 (228782-228995) | |
| 508-681, gnl|bosTau2|chr7 (13982412-13982239) | |
| 508-681, gnl|canFam2|chr20 (56729144-56729017) | |
| 508-681, gnl|danRer3|chr3 (31724473-31724357) | |
| 508-681, gnl|echTel1|scaffold_308194 (5362-5227) | |
| 508-681, gnl|fr1|chrUn (157565714-157565840) | |
| 508-681, gnl|hg17|chr19 (6325815-6325942) | |
| 508-681, gnl|Hg17|chr19 (6325820-6325984) | |
| 508-681, gnl|loxAfr1|scaffold_145646 (897-770) | |
| 508-681, gnl|mm7|chr17 (55210053-55210180) | |
| 508-681, gnl|Mm7|chr17 (55210058-55210231) | |
| 508-681, gnl|oryCun1|scaffold_76580 (732-859) | |
| 508-681, gnl|panTro1|chr20 (6683955-6684082) | |
| 508-681, gnl|rheMac2|chr19 (6277974-6278101) | |
| 508-681, gnl|rn3|chrUn (24765072-24764945) | |
| 508-681, gnl|tetNig1|chr3 (8234192-8234319) | |
| 508-681, gnl|xenTro1|scaffold_781 (231614-231741) | |
| 797-898, gnl|bosTau2|chr7 (13982074-13981974) | |
| 797-898, gnl|canFam2|chr20 (56728865-56728727) | |
| 797-898, gnl|echTel1|scaffold_308194 (5099-4977) | |
| 797-898, gnl|hg17|chr19 (6326083-6326212) | |
| 797-898, gnl|Hg17|chr19 (6326112-6326223) | |
| 797-898, gnl|loxAfr1|scaffold_145646 (640-512) | |
| 797-898, gnl|mm7|chr17 (55210321-55210480) | |
| 797-898, gnl|Mm7|chr17 (55210343-55210490) | |
| 797-898, gnl|oryCun1|scaffold_147372 (2458-2595) | |
| 797-898, gnl|panTro1|chr20 (6684223-6684350) | |
| 797-898, gnl|rn3|chrUn (24764803-24764646) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 210-393, gnl|bosTau2|chr7 (13982965-13982782) | |
| 210-393, gnl|canFam2|chr20 (56729730-56729524) | |
| 210-393, gnl|danRer3|chr3 (31724992-31724784) | |
| 210-393, gnl|dasNov1|scaffold_173319 (4274-4081) | |
| 210-393, gnl|echTel1|scaffold_308194 (5939-5734) | |
| 210-393, gnl|fr1|chrUn (157565115-157565319) | |
| 210-393, gnl|hg17|chr19 (6325203-6325409) | |
| 210-393, gnl|Hg17|chr19 (6325213-6325396) | |
| 210-393, gnl|loxAfr1|scaffold_145646 (1502-1298) | |
| 210-393, gnl|mm7|chr17 (55209508-55209714) | |
| 210-393, gnl|Mm7|chr17 (55209518-55209701) | |
| 210-393, gnl|oryCun1|scaffold_76580 (217-422) | |
| 210-393, gnl|panTro1|chr20 (6683358-6683564) | |
| 210-393, gnl|rheMac2|chr19 (6277390-6277596) | |
| 210-393, gnl|rn3|chrUn (24765649-24765437) | |
| 210-393, gnl|tetNig1|chr3 (8233562-8233749) | |
| 210-393, gnl|xenTro1|scaffold_781 (228782-228995) | |
| 508-681, gnl|bosTau2|chr7 (13982412-13982239) | |
| 508-681, gnl|canFam2|chr20 (56729144-56729017) | |
| 508-681, gnl|danRer3|chr3 (31724473-31724357) | |
| 508-681, gnl|echTel1|scaffold_308194 (5362-5227) | |
| 508-681, gnl|fr1|chrUn (157565714-157565840) | |
| 508-681, gnl|hg17|chr19 (6325815-6325942) | |
| 508-681, gnl|Hg17|chr19 (6325820-6325984) | |
| 508-681, gnl|loxAfr1|scaffold_145646 (897-770) | |
| 508-681, gnl|mm7|chr17 (55210053-55210180) | |
| 508-681, gnl|Mm7|chr17 (55210058-55210231) | |
| 508-681, gnl|oryCun1|scaffold_76580 (732-859) | |
| 508-681, gnl|panTro1|chr20 (6683955-6684082) | |
| 508-681, gnl|rheMac2|chr19 (6277974-6278101) | |
| 508-681, gnl|rn3|chrUn (24765072-24764945) | |
| 508-681, gnl|tetNig1|chr3 (8234192-8234319) | |
| 508-681, gnl|xenTro1|scaffold_781 (231614-231741) | |
| 797-898, gnl|bosTau2|chr7 (13982074-13981974) | |
| 797-898, gnl|canFam2|chr20 (56728865-56728727) | |
| 797-898, gnl|echTel1|scaffold_308194 (5099-4977) | |
| 797-898, gnl|hg17|chr19 (6326083-6326212) | |
| 797-898, gnl|Hg17|chr19 (6326112-6326223) | |
| 797-898, gnl|loxAfr1|scaffold_145646 (640-512) | |
| 797-898, gnl|mm7|chr17 (55210321-55210480) | |
| 797-898, gnl|Mm7|chr17 (55210343-55210490) | |
| 797-898, gnl|oryCun1|scaffold_147372 (2458-2595) | |
| 797-898, gnl|panTro1|chr20 (6684223-6684350) | |
| 797-898, gnl|rn3|chrUn (24764803-24764646) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| eye (0.341006) | |
| fty (0.17584) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cag (0.151194) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eje (0.0988338) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.341006) | |
| fty (0.17584) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cag (0.151194) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eje (0.0988338) |