Non-Coding RNA Search

Ss1.1-rcov39b_g18.5

Sequence:


               
               CCTCCAGGCGGCCCAACGACCAGGCTGGATACCTTTTGCCAAANTTCACTGCGGAGAGGA
AGTGCCCGAGGCCGTGGTGCAGTCGGCGGGGGTCGGCGGCGCAGACCTCCTGGCCTTCTC
TCACAGGTCGGTGCGCTCGCGCTCAGCTTTCCCGGCCCGGCTGCCCCGCCATCCTTGGCT
AGAAGCGCCGGCATGGGCCCGCNACGCGACCCGCGCCGCCCGAGAAAGGGACGATCGTGT
ACTTGCTCCGCGTACCCACTTGGAGCTGTTCAGCAGCCCCTTGCCGGGGCCTACTGGGCA
GGGCGAGGGTTGGACCGAAGCAGGGAGCCAGGGCCGCCCGCTCGGCGCCTGTGTCCGGGT
TTACACCGCATCCCGGCTCAGAGAGAGGCTGCGTTTCCTTCACTCTCCATCCCGGCGCTT
CGGGCCCCTCCAGGCCCAGGCGGCTGGCTAACGTTCGAGAGGTCTATTTTAGATGATATC
AAAAAAAATATTTTTTTAAGGGAAAAAAAACTCACCGGGAAAACCGGCGACGTATTGTGG
CCTTGGAGTTTACTAAAGCATAACATGAAAATCTTCTATTCCAGGAGATTTGAAGTAGAA
TTCTTATCCAGCCTTCAAAAAGCTATGTTCGGAGAGGTAGGAGAATATGCTCAGTATCAG
ATGGTATCCTCTACAAATTAGAGGATACCCTCCACCTACCTTTTTAAAGAAATCAAAAAC
AAATTTCCCCCTATCTTCCAATGCTAGCCCCCAAGCCTGGCGAGATTCTCTGCCTGCCTG
GCGGAAGCTACAGGGACGGCTCATCCCCTCTGTGATTTTTGTTTTTCTAAAGCCTTGCTT
CTCCCACCTTGGGCAGGAGAAATGTGAAACCCAGCAGCAATTGGACCCAGAGGGCTTGTG
GCCCAGATCCGGCCGGCAGAGAACTCTAGACCTGGTTGTTCTGTAGCGTGTCTTTGGAGG
ACCAAATTTTTCTAGAAAGAACTAGAGCACTTTTGTTGTTTTGATGATTGTTTGTTGATT
TGTCTTGTCAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCAGGCGGCCCAACGACCAGGCTGGATACCTTTTGCCAAANTTCACTGCGGAGAGGA
AGTGCCCGAGGCCGTGGTGCAGTCGGCGGGGGTCGGCGGCGCAGACCTCCTGGCCTTCTC
TCACAGGTCGGTGCGCTCGCGCTCAGCTTTCCCGGCCCGGCTGCCCCGCCATCCTTGGCT
AGAAGCGCCGGCATGGGCCCGCNACGCGACCCGCGCCGCCCGAGAAAGGGACGATCGTGT
ACTTGCTCCGCGTACCCACTTGGAGCTGTTCAGCAGCCCCTTGCCGGGGCCTACTGGGCA
GGGCGAGGGTTGGACCGAAGCAGGGAGCCAGGGCCGCCCGCTCGGCGCCTGTGTCCGGGT
TTACACCGCATCCCGGCTCAGAGAGAGGCTGCGTTTCCTTCACTCTCCATCCCGGCGCTT
CGGGCCCCTCCAGGCCCAGGCGGCTGGCTAACGTTCGAGAGGTCTATTTTAGATGATATC
AAAAAAAATATTTTTTTAAGGGAAAAAAAACTCACCGGGAAAACCGGCGACGTATTGTGG
CCTTGGAGTTTACTAAAGCATAACATGAAAATCTTCTATTCCAGGAGATTTGAAGTAGAA
TTCTTATCCAGCCTTCAAAAAGCTATGTTCGGAGAGGTAGGAGAATATGCTCAGTATCAG
ATGGTATCCTCTACAAATTAGAGGATACCCTCCACCTACCTTTTTAAAGAAATCAAAAAC
AAATTTCCCCCTATCTTCCAATGCTAGCCCCCAAGCCTGGCGAGATTCTCTGCCTGCCTG
GCGGAAGCTACAGGGACGGCTCATCCCCTCTGTGATTTTTGTTTTTCTAAAGCCTTGCTT
CTCCCACCTTGGGCAGGAGAAATGTGAAACCCAGCAGCAATTGGACCCAGAGGGCTTGTG
GCCCAGATCCGGCCGGCAGAGAACTCTAGACCTGGTTGTTCTGTAGCGTGTCTTTGGAGG
ACCAAATTTTTCTAGAAAGAACTAGAGCACTTTTGTTGTTTTGATGATTGTTTGTTGATT
TGTCTTGTCAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               455-563, - strand, RNAz p=0.979081

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               455-563, - strand, RNAz p=0.979081

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1029, gnl|bosTau2|chr1 (81426725-81427756)
               

               
               2-1029, gnl|Hg17|chr3 (140146844-140145803)
               

               
               2-1029, gnl|Mm7|chr9 (98598630-98599645)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1029, gnl|bosTau2|chr1 (81426725-81427756)
               

               
               2-1029, gnl|Hg17|chr3 (140146844-140145803)
               

               
               2-1029, gnl|Mm7|chr9 (98598630-98599645)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.396458)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)

	2-1029, gnl\|bosTau2\|chr1 (81426725-81427756)
	2-1029, gnl\|Hg17\|chr3 (140146844-140145803)
	2-1029, gnl\|Mm7\|chr9 (98598630-98599645)