Ss1.1-rcov40b_k13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCAACAACGGCAGCCTCTCCGCAGAGTTCAAACACCTGACCCTGAGAGAGCAGAGATGT GGGAACGGGGGCCGAGCCAATTGCGACGCCTCCCTCATTGTGACCGAGGAGCTGCACCTG ATCACCTTTGAGACCGAGGTGTATCATCAAGGCCTCAAGATTGACCTGGAGACCCACTCC TTGCCAGTCGTGGTCATCTCCAACATCTGTCAGATGCCCAACGCCTGGGCCTCCATCCTG TGGTATAACATGCTGACCAACAACCCCAAGAACGTGAACTTTTTCACCAAGCCCCCGATC GGAACGTGGGATCAAGTGGCCGAGGTGCTGAGCTGGCAGTTCTCTTCCACCACCAAGCGA GGGCTGAGCATCGAGCAGTTGAGCACACTGGCAGAGAAACTCCTAGGACCTGGTGTGAAC TATTCAGGGTGTCAGATCACGTGGGCTAAGTTTTGCAAAGAAAACATGGCTGGCAAGGGC TTCTCCTTCTGGGTCTGGCTGGACAATATCATTGACCTTGTGAAAAAGTACATCCTGGCC CTTTGGAATGAAGGGTACATAATGGGCTTTATCAGTAAGGAGAGGGAGCGGGCCATCTTG AGCACCAAGACCCCAGGCACCTTCCTGCTGAGATTCAGTGAAAGCAGCAAAGAAGGAGGA GTCACCTTCACTTGGGTGGAGAAGGACATCAGCGGTAAGACCCAGATCCAGTCGGTGGAA CCGTACACCAAGCAGCAGCTCAACAACATGTCGTTTGCTGAAATCATCATGGGCTATAAG ATCATGGATGCTACCAACATCCTTGTGTCTCCGCTGGTCTACCTCTACCCTGACATTCCA AAGGAAGAGGCGTTGGGAAAGTATTGTCGGCCAGAGAGCCAGGAGCATCCCGAAGCTGAC CCAGGTAGTGCTGCCCCATACCTGAAGACCAAGTTCATCTGTGTGACACCATTCATTGAT GCAGTTTGGAAATAATGGTGAAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCAACAACGGCAGCCTCTCCGCAGAGTTCAAACACCTGACCCTGAGAGAGCAGAGATGT GGGAACGGGGGCCGAGCCAATTGCGACGCCTCCCTCATTGTGACCGAGGAGCTGCACCTG ATCACCTTTGAGACCGAGGTGTATCATCAAGGCCTCAAGATTGACCTGGAGACCCACTCC TTGCCAGTCGTGGTCATCTCCAACATCTGTCAGATGCCCAACGCCTGGGCCTCCATCCTG TGGTATAACATGCTGACCAACAACCCCAAGAACGTGAACTTTTTCACCAAGCCCCCGATC GGAACGTGGGATCAAGTGGCCGAGGTGCTGAGCTGGCAGTTCTCTTCCACCACCAAGCGA GGGCTGAGCATCGAGCAGTTGAGCACACTGGCAGAGAAACTCCTAGGACCTGGTGTGAAC TATTCAGGGTGTCAGATCACGTGGGCTAAGTTTTGCAAAGAAAACATGGCTGGCAAGGGC TTCTCCTTCTGGGTCTGGCTGGACAATATCATTGACCTTGTGAAAAAGTACATCCTGGCC CTTTGGAATGAAGGGTACATAATGGGCTTTATCAGTAAGGAGAGGGAGCGGGCCATCTTG AGCACCAAGACCCCAGGCACCTTCCTGCTGAGATTCAGTGAAAGCAGCAAAGAAGGAGGA GTCACCTTCACTTGGGTGGAGAAGGACATCAGCGGTAAGACCCAGATCCAGTCGGTGGAA CCGTACACCAAGCAGCAGCTCAACAACATGTCGTTTGCTGAAATCATCATGGGCTATAAG ATCATGGATGCTACCAACATCCTTGTGTCTCCGCTGGTCTACCTCTACCCTGACATTCCA AAGGAAGAGGCGTTGGGAAAGTATTGTCGGCCAGAGAGCCAGGAGCATCCCGAAGCTGAC CCAGGTAGTGCTGCCCCATACCTGAAGACCAAGTTCATCTGTGTGACACCATTCATTGAT GCAGTTTGGAAATAATGGTGAAGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 269-407, gnl|bosTau2|chr19 (36820015-36819877) | |
| 269-407, gnl|Hg17|chr17 (37730392-37730254) | |
| 269-407, gnl|Mm7|chr11 (101003877-101003739) | |
| 451-557, gnl|bosTau2|chr19 (36818696-36818590) | |
| 451-557, gnl|canFam2|chr9 (23924983-23924872) | |
| 451-557, gnl|danRer3|chr3 (7082663-7082561) | |
| 451-557, gnl|dasNov1|scaffold_7933 (14557-14668) | |
| 451-557, gnl|echTel1|scaffold_319035 (203785-203896) | |
| 451-557, gnl|fr1|chrUn (208898008-208897897) | |
| 451-557, gnl|galGal2|chr27_random (274909-274789) | |
| 451-557, gnl|hg17|chr17 (37728800-37728911) | |
| 451-557, gnl|Hg17|chr17 (37728907-37728801) | |
| 451-557, gnl|loxAfr1|scaffold_17543 (18424-18533) | |
| 451-557, gnl|mm7|chr11 (101002926-101003034) | |
| 451-557, gnl|Mm7|chr11 (101003033-101002927) | |
| 451-557, gnl|monDom2|scaffold_18 (52680280-52680391) | |
| 451-557, gnl|oryCun1|scaffold_209287 (77915-77811) | |
| 451-557, gnl|panTro1|chr19 (40932335-40932446) | |
| 451-557, gnl|rheMac2|chr16 (52436445-52436556) | |
| 451-557, gnl|rn3|chr10 (89842413-89842525) | |
| 451-557, gnl|tetNig1|chr3 (12622678-12622573) | |
| 451-557, gnl|xenTro1|scaffold_1084 (218579-218473) | |
| 687-909, gnl|bosTau2|chr19 (36817061-36816839) | |
| 687-909, gnl|Hg17|chr17 (37728046-37727824) | |
| 687-909, gnl|Mm7|chr11 (101002333-101002111) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 269-407, gnl|bosTau2|chr19 (36820015-36819877) | |
| 269-407, gnl|Hg17|chr17 (37730392-37730254) | |
| 269-407, gnl|Mm7|chr11 (101003877-101003739) | |
| 451-557, gnl|bosTau2|chr19 (36818696-36818590) | |
| 451-557, gnl|canFam2|chr9 (23924983-23924872) | |
| 451-557, gnl|danRer3|chr3 (7082663-7082561) | |
| 451-557, gnl|dasNov1|scaffold_7933 (14557-14668) | |
| 451-557, gnl|echTel1|scaffold_319035 (203785-203896) | |
| 451-557, gnl|fr1|chrUn (208898008-208897897) | |
| 451-557, gnl|galGal2|chr27_random (274909-274789) | |
| 451-557, gnl|hg17|chr17 (37728800-37728911) | |
| 451-557, gnl|Hg17|chr17 (37728907-37728801) | |
| 451-557, gnl|loxAfr1|scaffold_17543 (18424-18533) | |
| 451-557, gnl|mm7|chr11 (101002926-101003034) | |
| 451-557, gnl|Mm7|chr11 (101003033-101002927) | |
| 451-557, gnl|monDom2|scaffold_18 (52680280-52680391) | |
| 451-557, gnl|oryCun1|scaffold_209287 (77915-77811) | |
| 451-557, gnl|panTro1|chr19 (40932335-40932446) | |
| 451-557, gnl|rheMac2|chr16 (52436445-52436556) | |
| 451-557, gnl|rn3|chr10 (89842413-89842525) | |
| 451-557, gnl|tetNig1|chr3 (12622678-12622573) | |
| 451-557, gnl|xenTro1|scaffold_1084 (218579-218473) | |
| 687-909, gnl|bosTau2|chr19 (36817061-36816839) | |
| 687-909, gnl|Hg17|chr17 (37728046-37727824) | |
| 687-909, gnl|Mm7|chr11 (101002333-101002111) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) |