Non-Coding RNA Search

Ss1.1-rcov40b_p21.5

Sequence:


               
               GCCGACTGGCAGTACTCGCAGCGCGAGCTGGACGCCGTCGAGGTCTTCTATCTCGCGCAC
TGCCCGGGACAACCGGCTCGTGCTGCATGTTCGTGCGCTGCGCGCCCTCCAGCCGCTACA
CGCTGCTCTTCTCGCACGGCAACGCGGTGGACCTGGGCCAGATGTGCAGCTTCTACATCG
GCCTCGGCTCGCGCATCAACTGCGACATCTTCTCCTACGACTACTCGGGCTACGGCGTCA
GCTCGGGCAAGCCCTCCGAAAAGAACCTCTACGCCGACATCGACGCCGCGTGGCAGGCGC
TGCGCACCAGGTACGGCGTGAGTCCTGAGAACATCATCCTGTACGGTCAGAGCATCGGGA
CAGTCCCCACGGTAGACCTGGCCTCCAGGTACGAGTGCGCAGCTGTCATCCTCCATTCGC
CGCTCATGTCTGGATTGCGCGTGGCTTTTCCTGACACCAGGAAAACCTACTGCTTTGATG
CTTTCCCCAGCATTGACAAGATATCTAAGGTCACCTCGCCCGTGCTGGTCATTCACGGCA
CAGAAGACGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGACTGGCAGTACTCGCAGCGCGAGCTGGACGCCGTCGAGGTCTTCTATCTCGCGCAC
TGCCCGGGACAACCGGCTCGTGCTGCATGTTCGTGCGCTGCGCGCCCTCCAGCCGCTACA
CGCTGCTCTTCTCGCACGGCAACGCGGTGGACCTGGGCCAGATGTGCAGCTTCTACATCG
GCCTCGGCTCGCGCATCAACTGCGACATCTTCTCCTACGACTACTCGGGCTACGGCGTCA
GCTCGGGCAAGCCCTCCGAAAAGAACCTCTACGCCGACATCGACGCCGCGTGGCAGGCGC
TGCGCACCAGGTACGGCGTGAGTCCTGAGAACATCATCCTGTACGGTCAGAGCATCGGGA
CAGTCCCCACGGTAGACCTGGCCTCCAGGTACGAGTGCGCAGCTGTCATCCTCCATTCGC
CGCTCATGTCTGGATTGCGCGTGGCTTTTCCTGACACCAGGAAAACCTACTGCTTTGATG
CTTTCCCCAGCATTGACAAGATATCTAAGGTCACCTCGCCCGTGCTGGTCATTCACGGCA
CAGAAGACGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9368522|emb|CAB98203.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9368522|emb|CAB98203.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               7-126, - strand, RNAz p=0.847104
               

               
               409-526, - strand, RNAz p=0.577375

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-126, - strand, RNAz p=0.847104
               

               
               409-526, - strand, RNAz p=0.577375

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               7-526, gnl|bosTau2|chr20 (18998160-18997655)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-526, gnl|bosTau2|chr20 (18998160-18997655)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cga (0.279096)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               cov (0.132153)

	7-126, - strand, RNAz p=0.847104
	409-526, - strand, RNAz p=0.577375