Non-Coding RNA Search

Ss1.1-rcsk01_f18.5

Sequence:


               
               ATCTCCCATTTTTCCCTAATGCATCATGATTTTACCGCTATTTAAGGAGGAGATATGCAG
AAGAGCAGTGTCTTGGGTTAATGCGGTCACGTCACTCTTTTTGGAAAGCTCACTGGGGAC
CCACCCAGAGAAAATGCTGTATTGAGTTAGGCCGTCTCACCTGCTCTTGAGCAGTAGAGT
TCTTGCCCAAGGAAAATGGAAAGGAGCAAGGGGAAAAGACAAAACAACTGGTCATGTTCA
CCTTTTTGGTGGTCTTGTTGCTCTATTTGAAATGAATGCACTTGGTTTAGGTTTCCTATA
AGGGGGATTGAGTCCACATACCTTGCATAAGAAGTATCTCTAAAGAATTTTTACCCTATG
TAAAGCATCTGTGGTCCTAGGATGTTAAACGTACCCTTTTTTCTAGTAGTTTTGATACTG
ATAATCAATGACACTTGGCTTTCTGTTTCATAGCACTTGCACTCCGGTAATTAGAATAAA
CTCCTACAAGGCAGTGATGGTAATTTAGAAGCATTATCTCTATTTGATGTTAATGCTATT
ATGTTGGCCATTTTTAATTACTATTTTGGGTATAGAATATAAATACGGCATTTCACGAAA
CCAACTTGAGAACTCCGGGCCTGGAAATACAGTAGGGTATGAACGGTAATGCACAATGAT
AGCAAGAATGTCAGGGGCCCTTCTTTGTTGTGTCATTCATGCTGTCTTCTCTTTTCCATG
AAGCGCATGAATATTTCACATATCTGCATCCTCATCCCCTATTCTTCTTGACTAATTTTT
AGACTGTCTGAATTTGCATTTCACATGGTAGCTGATTAGGAGATGCCGAGTGCAGCAGAG
GAGCCTCAGCAGGCGGTTGCCATGGTGACCTTCAGCAGGATTTTAATGATGGCACCACTG
GCGGTTGGTTGAAGTCGGCCTGCCTGCAGGGCTACTTCACTGCAGCTAAGTGTGAAGTCG
GATTTGCGGGTTCTCAGCCAAGGGGCAGACATCAAAGTCTGGCCCAGACAGAAGAAGGTC
TTACAGTTGGGAAAGGAAAATAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTCCCATTTTTCCCTAATGCATCATGATTTTACCGCTATTTAAGGAGGAGATATGCAG
AAGAGCAGTGTCTTGGGTTAATGCGGTCACGTCACTCTTTTTGGAAAGCTCACTGGGGAC
CCACCCAGAGAAAATGCTGTATTGAGTTAGGCCGTCTCACCTGCTCTTGAGCAGTAGAGT
TCTTGCCCAAGGAAAATGGAAAGGAGCAAGGGGAAAAGACAAAACAACTGGTCATGTTCA
CCTTTTTGGTGGTCTTGTTGCTCTATTTGAAATGAATGCACTTGGTTTAGGTTTCCTATA
AGGGGGATTGAGTCCACATACCTTGCATAAGAAGTATCTCTAAAGAATTTTTACCCTATG
TAAAGCATCTGTGGTCCTAGGATGTTAAACGTACCCTTTTTTCTAGTAGTTTTGATACTG
ATAATCAATGACACTTGGCTTTCTGTTTCATAGCACTTGCACTCCGGTAATTAGAATAAA
CTCCTACAAGGCAGTGATGGTAATTTAGAAGCATTATCTCTATTTGATGTTAATGCTATT
ATGTTGGCCATTTTTAATTACTATTTTGGGTATAGAATATAAATACGGCATTTCACGAAA
CCAACTTGAGAACTCCGGGCCTGGAAATACAGTAGGGTATGAACGGTAATGCACAATGAT
AGCAAGAATGTCAGGGGCCCTTCTTTGTTGTGTCATTCATGCTGTCTTCTCTTTTCCATG
AAGCGCATGAATATTTCACATATCTGCATCCTCATCCCCTATTCTTCTTGACTAATTTTT
AGACTGTCTGAATTTGCATTTCACATGGTAGCTGATTAGGAGATGCCGAGTGCAGCAGAG
GAGCCTCAGCAGGCGGTTGCCATGGTGACCTTCAGCAGGATTTTAATGATGGCACCACTG
GCGGTTGGTTGAAGTCGGCCTGCCTGCAGGGCTACTTCACTGCAGCTAAGTGTGAAGTCG
GATTTGCGGGTTCTCAGCCAAGGGGCAGACATCAAAGTCTGGCCCAGACAGAAGAAGGTC
TTACAGTTGGGAAAGGAAAATAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               656-935, + strand, RNAz p=0.874365

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               656-935, + strand, RNAz p=0.874365

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               684-798, + strand, RNAmicro p=0.977229

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               684-798, + strand, RNAmicro p=0.977229

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1043, gnl|bosTau2|chr16 (55940395-55941425)
               

               
               1-1043, gnl|Hg17|chr1 (194998770-194999819)
               

               
               1-1043, gnl|Mm7|chr1 (138383149-138382118)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1043, gnl|bosTau2|chr16 (55940395-55941425)
               

               
               1-1043, gnl|Hg17|chr1 (194998770-194999819)
               

               
               1-1043, gnl|Mm7|chr1 (138383149-138382118)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cje (0.165235)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               csk (0.140746)

	1-1043, gnl\|bosTau2\|chr16 (55940395-55941425)
	1-1043, gnl\|Hg17\|chr1 (194998770-194999819)
	1-1043, gnl\|Mm7\|chr1 (138383149-138382118)