Non-Coding RNA Search

Ss1.1-rcsk01_i7.5

Sequence:


               
               AGGAGAGAAGATTCGAACTTGCATCACTAGAGATAAACGATCCAGGCTCACTGCGGGCAA
CCTGGGTGGGCCTGAGGGGCGGGAGCAATGAATTCCCCACACTGTCTGTCCTCCGGCCTC
GAATTAATAGGCAAGATCCTTGAAGAGTCTTCTTTGCTGGGATCTGAAATATTTGCCTGA
TAAATTGGTTTTCAAGTCATCCTTGAACAAAATGACCCACCTAGGAACTTTCTCCCCCTG
AGTGGTAAAACCTGGGCTGAAGTTGCCTCTCCTTAAAGCTGAGTGTTTATTCTGATTTTG
TTTCATTTGTGTGTAAGTAGGTACTGTTGACTTAACCATTTGTACTTTCTAAGTTAGAGA
ATTTTTCTACTATACATGTCTTTTAATATTGTAGCTATAGCTCATACTTTGAAATAATTA
CCCAGTATTATTTTGCAGTTGAGAATTGAGATATTGTTCAGTGCAATTACTTCTAGGATT
TGCCTAAATCTGAGCATCACCTGCTGAATCCCTAAAGTTCAGTAAAAGACTAGTGTTATG
CGAGTGATAAATACGCGTTCCACTCAGATGTTAATTTCAGACAAAGGCATGAACTTAGCA
GATATGTTTAATAGGGCTAGTTTGAATCCCTCTGTTTTTATGTTTCCTCCCCACCCACCC
CCTTCAAAAAAGCCGAGAGATGACCACACAACAGGTAATGCACGATGCTCATCCATCCTT
TGGCCAAGTTGTTAAAACACGTTGCGTTGTGTGTTGACTGACCCCTGGCCTGTTCTGTTG
TCAGTTTTCTTCACTGATTGTATAAGTGGTATAATAGTCAATTTAAGGTTTTCTGTCATA
GGAGGCCCTTTTCTGTCTTTTAAATTATTGTTCCATAGAGTTGATCCAGGTTATATAGTC
CTGAAACTCGTGTGACACAAAAATAAAAGACACCCTTTGCCTTGAATTGTCAGGTACAGG
TGGATGCTGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGAGAAGATTCGAACTTGCATCACTAGAGATAAACGATCCAGGCTCACTGCGGGCAA
CCTGGGTGGGCCTGAGGGGCGGGAGCAATGAATTCCCCACACTGTCTGTCCTCCGGCCTC
GAATTAATAGGCAAGATCCTTGAAGAGTCTTCTTTGCTGGGATCTGAAATATTTGCCTGA
TAAATTGGTTTTCAAGTCATCCTTGAACAAAATGACCCACCTAGGAACTTTCTCCCCCTG
AGTGGTAAAACCTGGGCTGAAGTTGCCTCTCCTTAAAGCTGAGTGTTTATTCTGATTTTG
TTTCATTTGTGTGTAAGTAGGTACTGTTGACTTAACCATTTGTACTTTCTAAGTTAGAGA
ATTTTTCTACTATACATGTCTTTTAATATTGTAGCTATAGCTCATACTTTGAAATAATTA
CCCAGTATTATTTTGCAGTTGAGAATTGAGATATTGTTCAGTGCAATTACTTCTAGGATT
TGCCTAAATCTGAGCATCACCTGCTGAATCCCTAAAGTTCAGTAAAAGACTAGTGTTATG
CGAGTGATAAATACGCGTTCCACTCAGATGTTAATTTCAGACAAAGGCATGAACTTAGCA
GATATGTTTAATAGGGCTAGTTTGAATCCCTCTGTTTTTATGTTTCCTCCCCACCCACCC
CCTTCAAAAAAGCCGAGAGATGACCACACAACAGGTAATGCACGATGCTCATCCATCCTT
TGGCCAAGTTGTTAAAACACGTTGCGTTGTGTGTTGACTGACCCCTGGCCTGTTCTGTTG
TCAGTTTTCTTCACTGATTGTATAAGTGGTATAATAGTCAATTTAAGGTTTTCTGTCATA
GGAGGCCCTTTTCTGTCTTTTAAATTATTGTTCCATAGAGTTGATCCAGGTTATATAGTC
CTGAAACTCGTGTGACACAAAAATAAAAGACACCCTTTGCCTTGAATTGTCAGGTACAGG
TGGATGCTGGAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               39-577, gnl|bosTau2|chr11 (67880665-67881216)
               

               
               39-577, gnl|Hg17|chrX (143116385-143115886)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-577, gnl|bosTau2|chr11 (67880665-67881216)
               

               
               39-577, gnl|Hg17|chrX (143116385-143115886)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               eli (0.303628)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               eep (0.122564)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.303628)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               eep (0.122564)
               

               
               nbm (0.0993246)

	39-577, gnl\|bosTau2\|chr11 (67880665-67881216)
	39-577, gnl\|Hg17\|chrX (143116385-143115886)

	eli (0.303628)
	ill (0.175593)
	eye (0.170503)
	csp (0.161186)
	cag (0.151194)
	liv (0.146284)
	csk (0.140746)
	eep (0.122564)
	nbm (0.0993246)