Non-Coding RNA Search

Ss1.1-rcsk01_k11.5

Sequence:


               
               AAAAGAGCCAATAAGCTCATACATTTTACTCTGCTTTCCTCATATACACACTATTTATTA
TGGTGAACAAAGAAGCACTAATGGTCAAACAATACAACTGAAGACCCAAGTTTTCAGGAG
ATTTCAGGATGATGCTGATAGTGAAGATCATGATGATCATCAAGAAGGCCCAGAGGAAGA
AGGATCAGAAGAACACGTGGACCCTCACTATTATGGAGGTCAAGAATGGCAAGAAACCAT
ATAGGTATACATTATGACTTCATAAAAACTTATTATTCAATATAAATTTAACTAAATATG
CATAGCTAATAGTAATATATCTCAGTTGTGTACTGGTATAAGATCAGATTGAATTTAGTT
GTTGATAACATATGCATCATTACATAGCATTAGATTACACTAGTCTTTAGAAATGTAGTT
AGAATGACAAGTGAGACTCAAATATTACACTTTAGACATAAAATTATCACCATGTTGACA
AAAAAGGCAAGTATGCCTGGGATGTAGCGCAGCGGAAACAAATCTGACTAGGAACCATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGAGCCAATAAGCTCATACATTTTACTCTGCTTTCCTCATATACACACTATTTATTA
TGGTGAACAAAGAAGCACTAATGGTCAAACAATACAACTGAAGACCCAAGTTTTCAGGAG
ATTTCAGGATGATGCTGATAGTGAAGATCATGATGATCATCAAGAAGGCCCAGAGGAAGA
AGGATCAGAAGAACACGTGGACCCTCACTATTATGGAGGTCAAGAATGGCAAGAAACCAT
ATAGGTATACATTATGACTTCATAAAAACTTATTATTCAATATAAATTTAACTAAATATG
CATAGCTAATAGTAATATATCTCAGTTGTGTACTGGTATAAGATCAGATTGAATTTAGTT
GTTGATAACATATGCATCATTACATAGCATTAGATTACACTAGTCTTTAGAAATGTAGTT
AGAATGACAAGTGAGACTCAAATATTACACTTTAGACATAAAATTATCACCATGTTGACA
AAAAAGGCAAGTATGCCTGGGATGTAGCGCAGCGGAAACAAATCTGACTAGGAACCATGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-228, - strand, RNAz p=0.588777

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-228, - strand, RNAz p=0.588777

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-496, gnl|bosTau2|chr8 (46566431-46566943)
               

               
               2-496, gnl|Hg17|chr9 (92257228-92256689)
               

               
               2-496, gnl|Mm7|chr13 (49076019-49076476)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-496, gnl|bosTau2|chr8 (46566431-46566943)
               

               
               2-496, gnl|Hg17|chr9 (92257228-92256689)
               

               
               2-496, gnl|Mm7|chr13 (49076019-49076476)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fat (0.147427)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               csk (0.140746)

	2-496, gnl\|bosTau2\|chr8 (46566431-46566943)
	2-496, gnl\|Hg17\|chr9 (92257228-92256689)
	2-496, gnl\|Mm7\|chr13 (49076019-49076476)