Non-Coding RNA Search

Ss1.1-rcsk01_o17.5

Sequence:


               
               GAAACTAAATTCTAATACCATTAGTACATGTATAACTAGGTGGGTAATTCTGAATGGTAC
AGTTAGAATTGGCTTAAATGTTCACATTCTTTGATCTACCAACTGTACTTCTAAACTTAT
CCTAAGGACCTAATAAAGCACAAGAACAAAATAAGTACAAGGAAGTTCATTATGTATAAT
CACAAAATGACCCGTTATCATCTAAAGATCTAATAATAAAATACTAGTTAGTTTTTGGTA
TATAAACCTAAGGAATACTCTGTATCTAATAATCAGAAACTATATTAGGCGAAGAGGCAA
GTTTAAGAAGACTGGTCTAGTTTTTTGGGGGTTTTTTTTGCCACGCTTGTGGCATGCTGA
AGTTCCAGAGACTGAATCTAAGCCACAGCAGTGACAACGCCAGAGCCTTTCCTGCTAAGC
CAGGGAAGTCGCTGGTCTAGTTTTTAATGTTTGTGTATCTATCTCTTATTAGAATGTACC
CATTTCCTGATCTCCAATGCTATATATAGTACAAACAGTCTAAAACAGATTCCTGATTAT
TGTTAGGAATACATATAATCTTGTTATTTCTCCTGCTTAAAACCTTTCAACTTAGAGGTA
ATCAAGACAAATATAAGCTCTTGAACATGGCCTTTGAAAGGCCTTTATGATTCAGGACTC
TGGTTAAAAATGCTGACACCACCACTGGAGAGAAAAAGTCTTGACCTATCAAATGTTGGC
CCCTTCTGTTGAAAATTTTTTGTTTCAGCAATTATTAGTAGTTCTCTACTTACTTTGTTC
ACAGCTGTTTTAACAAGTAAAAGATGCTCAGTGAACCTGAATGCAAAACACTCAATTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACTAAATTCTAATACCATTAGTACATGTATAACTAGGTGGGTAATTCTGAATGGTAC
AGTTAGAATTGGCTTAAATGTTCACATTCTTTGATCTACCAACTGTACTTCTAAACTTAT
CCTAAGGACCTAATAAAGCACAAGAACAAAATAAGTACAAGGAAGTTCATTATGTATAAT
CACAAAATGACCCGTTATCATCTAAAGATCTAATAATAAAATACTAGTTAGTTTTTGGTA
TATAAACCTAAGGAATACTCTGTATCTAATAATCAGAAACTATATTAGGCGAAGAGGCAA
GTTTAAGAAGACTGGTCTAGTTTTTTGGGGGTTTTTTTTGCCACGCTTGTGGCATGCTGA
AGTTCCAGAGACTGAATCTAAGCCACAGCAGTGACAACGCCAGAGCCTTTCCTGCTAAGC
CAGGGAAGTCGCTGGTCTAGTTTTTAATGTTTGTGTATCTATCTCTTATTAGAATGTACC
CATTTCCTGATCTCCAATGCTATATATAGTACAAACAGTCTAAAACAGATTCCTGATTAT
TGTTAGGAATACATATAATCTTGTTATTTCTCCTGCTTAAAACCTTTCAACTTAGAGGTA
ATCAAGACAAATATAAGCTCTTGAACATGGCCTTTGAAAGGCCTTTATGATTCAGGACTC
TGGTTAAAAATGCTGACACCACCACTGGAGAGAAAAAGTCTTGACCTATCAAATGTTGGC
CCCTTCTGTTGAAAATTTTTTGTTTCAGCAATTATTAGTAGTTCTCTACTTACTTTGTTC
ACAGCTGTTTTAACAAGTAAAAGATGCTCAGTGAACCTGAATGCAAAACACTCAATTCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               471-704, - strand, RNAz p=0.983396

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               471-704, - strand, RNAz p=0.983396

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               9-326, gnl|bosTau2|chr18 (23204196-23204515)
               

               
               9-326, gnl|Hg17|chr16 (57113671-57113958)
               


               
               432-765, gnl|bosTau2|chr18 (23204501-23204841)
               

               
               432-765, gnl|Hg17|chr16 (57113944-57114250)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-326, gnl|bosTau2|chr18 (23204196-23204515)
               

               
               9-326, gnl|Hg17|chr16 (57113671-57113958)
               


               
               432-765, gnl|bosTau2|chr18 (23204501-23204841)
               

               
               432-765, gnl|Hg17|chr16 (57113944-57114250)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               csk (0.140746)
               

               
               pla (0.133672)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               cbl (0.114797)

	9-326, gnl\|bosTau2\|chr18 (23204196-23204515)
	9-326, gnl\|Hg17\|chr16 (57113671-57113958)

	432-765, gnl\|bosTau2\|chr18 (23204501-23204841)
	432-765, gnl\|Hg17\|chr16 (57113944-57114250)