Non-Coding RNA Search

Ss1.1-rcsk01_p19.5

Sequence:


               
               TTCCTTCCCACGTTATTTTCTCATCCAGAAATAAGTGCCCAAGTCCTCCACCTTGCACTC
AGCTGCTTGAAAGTCTAAGACAGGACAGGTCAGGTGTTTAATGAGAAATTTACCCATCTA
GAAGAGGGGAGGTTGTTTTCCCGTGGAATCTCGAGGAGCCCTAGGGGCAAGAAGTGGGGT
ATTCGTCCTAGCCTAGCCTCATCAACAAAGAACATTAGTCCCACTCCAGGTATGTGCTAG
GCATGGGAGGAATGCACAGACCTGGTCTTGAGGAGCGAAGTGCCTCTGTATTAAGTGTTC
TTGAATCTAGTACTTGAGACAGAGGAAGTGGAGTTCGGGATGAAGGTGGAGCTGGAATGA
TAATTGATGATGATGATGGAGATAGTTAATCATTTTCTTTTGTTTTGTTTTCTATCCCAT
GAATGCTCAGTATTAAGCCATCTGGTTTGAAAAGAATTTTTGGCTCTTTTCAAACATTGT
CTCCTTTTCCCTTATATATGTAACTTGTAGCTGAAGTAACAAGCTTGGAAAGTTTCCTGT
GGATTGCCTAAGGTTACATAGCAAAGCATTGATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTTCCCACGTTATTTTCTCATCCAGAAATAAGTGCCCAAGTCCTCCACCTTGCACTC
AGCTGCTTGAAAGTCTAAGACAGGACAGGTCAGGTGTTTAATGAGAAATTTACCCATCTA
GAAGAGGGGAGGTTGTTTTCCCGTGGAATCTCGAGGAGCCCTAGGGGCAAGAAGTGGGGT
ATTCGTCCTAGCCTAGCCTCATCAACAAAGAACATTAGTCCCACTCCAGGTATGTGCTAG
GCATGGGAGGAATGCACAGACCTGGTCTTGAGGAGCGAAGTGCCTCTGTATTAAGTGTTC
TTGAATCTAGTACTTGAGACAGAGGAAGTGGAGTTCGGGATGAAGGTGGAGCTGGAATGA
TAATTGATGATGATGATGGAGATAGTTAATCATTTTCTTTTGTTTTGTTTTCTATCCCAT
GAATGCTCAGTATTAAGCCATCTGGTTTGAAAAGAATTTTTGGCTCTTTTCAAACATTGT
CTCCTTTTCCCTTATATATGTAACTTGTAGCTGAAGTAACAAGCTTGGAAAGTTTCCTGT
GGATTGCCTAAGGTTACATAGCAAAGCATTGATCAA

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-576, gnl|bosTau2|chr15 (50472035-50471465)
               

               
               1-576, gnl|canFam2|chr18 (41578518-41577894)
               

               
               1-576, gnl|echTel1|scaffold_292965 (131866-131160)
               

               
               1-576, gnl|hg17|chr11 (57201708-57202384)
               

               
               1-576, gnl|Hg17|chr11 (57201900-57203041)
               

               
               1-576, gnl|mm7|chr2 (84550381-84549668)
               

               
               1-576, gnl|Mm7|chr2 (84550121-84549418)
               

               
               1-576, gnl|monDom2|scaffold_33 (20816078-20816813)
               

               
               1-576, gnl|oryCun1|scaffold_211845 (77308-76688)
               

               
               1-576, gnl|panTro1|chr9 (58111889-58112565)
               

               
               1-576, gnl|rheMac2|chr14 (15733713-15733033)
               

               
               1-576, gnl|rn3|chr3 (67813130-67812490)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr15 (50472035-50471465)
               

               
               1-576, gnl|canFam2|chr18 (41578518-41577894)
               

               
               1-576, gnl|echTel1|scaffold_292965 (131866-131160)
               

               
               1-576, gnl|hg17|chr11 (57201708-57202384)
               

               
               1-576, gnl|Hg17|chr11 (57201900-57203041)
               

               
               1-576, gnl|mm7|chr2 (84550381-84549668)
               

               
               1-576, gnl|Mm7|chr2 (84550121-84549418)
               

               
               1-576, gnl|monDom2|scaffold_33 (20816078-20816813)
               

               
               1-576, gnl|oryCun1|scaffold_211845 (77308-76688)
               

               
               1-576, gnl|panTro1|chr9 (58111889-58112565)
               

               
               1-576, gnl|rheMac2|chr14 (15733713-15733033)
               

               
               1-576, gnl|rn3|chr3 (67813130-67812490)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	1-576, gnl\|bosTau2\|chr15 (50472035-50471465)
	1-576, gnl\|canFam2\|chr18 (41578518-41577894)
	1-576, gnl\|echTel1\|scaffold_292965 (131866-131160)
	1-576, gnl\|hg17\|chr11 (57201708-57202384)
	1-576, gnl\|Hg17\|chr11 (57201900-57203041)
	1-576, gnl\|mm7\|chr2 (84550381-84549668)
	1-576, gnl\|Mm7\|chr2 (84550121-84549418)
	1-576, gnl\|monDom2\|scaffold_33 (20816078-20816813)
	1-576, gnl\|oryCun1\|scaffold_211845 (77308-76688)
	1-576, gnl\|panTro1\|chr9 (58111889-58112565)
	1-576, gnl\|rheMac2\|chr14 (15733713-15733033)
	1-576, gnl\|rn3\|chr3 (67813130-67812490)