Non-Coding RNA Search

Ss1.1-rcsk02_a14.5

Sequence:


               
               TTCCCACTGTGCTAATAACAATATTCCATAATTAGATGACTCAGAAGGGGCTTGTCATAC
TATCTTGTGCATATGTTTCATGTTACTTGAACAGAATGTCATCTCTAAAGATTTCGAGTT
AGTAATTACTTACCAAATGTAAAATTTTCTCTAAGTATAAATTTTTCTTTAAGAAAAAAA
AATCGGGGCTAGAACTTTGTTTTTTCTCTACAACTAGATAATTTAGTGTGAAATACTGTT
ACTGTTTTTTCGGTTCACATTGGAAACCAATTTGTTTGTATTTCTTAAGATGTCAGTTCT
AGTTCCCTGGTGGCTCAGTAGGTTAAGGATCTGGTGTTGTCACTGCTGTAGCTCGGGTTC
AGTCCCTGGCCCCAGAATTCCACCCCACCCTGCCCCGATGTCTGTCCTTACCTCCTTGAA
GTTTTTTTAAAAGTAGACATCATAGCTTGAGAATGTACCAGTCATTCTTCCAGAGCGACC
ACATTGTGGTTTTGTTTGTTAAAGGACTTAAGCAAGGCTTTGGGAGGGAATCGCTGGGCC
ACACCTTGAGGACATCTGCAGGAGCGCACTCAGTAGTGAGCCTCAGAAAGGATGTCTAGC
AAGAAGATGCTCCGGCAGATGCCGCAGAGCAGTATCACAGCAGCAGGCGGGATGCAGCCC
GTGTTCTGGTAGGAGGCTTCTGAGGTGTGAATGGTTGAGAGGAACTGAGGCTTTTTCTAT
GACAGGAGTGGACTGTTTCACCATGACCCTTAAAATACGGTAATTGGGTTGTTTAACGTT
TTAATTAAGAATAGTCACTGACTGTATAATCTACTTACTAAGCAATTAAAAATCATTTTA
AAATTACTTCATACTTTGTACTTAATTTAGCTATAAGGAGGAGAGGTAGTTGGTAGATGT
TACAAAAAGTTTTGTGCATTATTATCAAGAGTAAATGTTGCTAACATTGACAGTGATGCT
TATATTTTGGGTTTTTTTCCCACATTTTATTGCGATTCCCTTTTTTTCTTTTAAAAATGT
TTTTATTGTGATTCCTTCTTTTTATACCTGAATAACAACTTCCCCAAAGGGATGATGGAC
ATGTTTATTCTAAGAAAGATATATAGATAATGTATTGGTAGCATCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCACTGTGCTAATAACAATATTCCATAATTAGATGACTCAGAAGGGGCTTGTCATAC
TATCTTGTGCATATGTTTCATGTTACTTGAACAGAATGTCATCTCTAAAGATTTCGAGTT
AGTAATTACTTACCAAATGTAAAATTTTCTCTAAGTATAAATTTTTCTTTAAGAAAAAAA
AATCGGGGCTAGAACTTTGTTTTTTCTCTACAACTAGATAATTTAGTGTGAAATACTGTT
ACTGTTTTTTCGGTTCACATTGGAAACCAATTTGTTTGTATTTCTTAAGATGTCAGTTCT
AGTTCCCTGGTGGCTCAGTAGGTTAAGGATCTGGTGTTGTCACTGCTGTAGCTCGGGTTC
AGTCCCTGGCCCCAGAATTCCACCCCACCCTGCCCCGATGTCTGTCCTTACCTCCTTGAA
GTTTTTTTAAAAGTAGACATCATAGCTTGAGAATGTACCAGTCATTCTTCCAGAGCGACC
ACATTGTGGTTTTGTTTGTTAAAGGACTTAAGCAAGGCTTTGGGAGGGAATCGCTGGGCC
ACACCTTGAGGACATCTGCAGGAGCGCACTCAGTAGTGAGCCTCAGAAAGGATGTCTAGC
AAGAAGATGCTCCGGCAGATGCCGCAGAGCAGTATCACAGCAGCAGGCGGGATGCAGCCC
GTGTTCTGGTAGGAGGCTTCTGAGGTGTGAATGGTTGAGAGGAACTGAGGCTTTTTCTAT
GACAGGAGTGGACTGTTTCACCATGACCCTTAAAATACGGTAATTGGGTTGTTTAACGTT
TTAATTAAGAATAGTCACTGACTGTATAATCTACTTACTAAGCAATTAAAAATCATTTTA
AAATTACTTCATACTTTGTACTTAATTTAGCTATAAGGAGGAGAGGTAGTTGGTAGATGT
TACAAAAAGTTTTGTGCATTATTATCAAGAGTAAATGTTGCTAACATTGACAGTGATGCT
TATATTTTGGGTTTTTTTCCCACATTTTATTGCGATTCCCTTTTTTTCTTTTAAAAATGT
TTTTATTGTGATTCCTTCTTTTTATACCTGAATAACAACTTCCCCAAAGGGATGATGGAC
ATGTTTATTCTAAGAAAGATATATAGATAATGTATTGGTAGCATCTGC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               13-248, gnl|bosTau2|chr11 (20284034-20284273)
               

               
               13-248, gnl|Hg17|chr6 (57142181-57142426)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-248, gnl|bosTau2|chr11 (20284034-20284273)
               

               
               13-248, gnl|Hg17|chr6 (57142181-57142426)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               csk (0.281492)
               

               
               sug (0.254582)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)
               

               
               sug (0.254582)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               cty (0.10408)

	13-248, gnl\|bosTau2\|chr11 (20284034-20284273)
	13-248, gnl\|Hg17\|chr6 (57142181-57142426)

	csk (0.281492)
	sug (0.254582)
	fco (0.157208)
	liv (0.146284)
	che (0.136314)
	kid (0.129735)
	cty (0.10408)