Non-Coding RNA Search

Ss1.1-rcsk02_b7.5

Sequence:


               
               CTGTCGTGGCTCGGCGATAATGAACCTGACTAGTATCCATGAGGATGGCCTCACTCAGTG
GGTTAAGGATCTGTTGCCACGAGCTGTGGTGTAGGTCGCGGACACGGCCCGGATCCCACA
TTGCTGTGGCTGTGGCACAGGCCAGCAGCTGTAGCTCCAATTTGACCCCTAGCCTGGACC
TTCCATGTGCTGTAAGTGCGGCCCTAAAAAATAAAAAAAAAAATTTTAAAAAGTCAGGGG
GAAGGATTGAGGTCAGCCAAAAGTCAGTTAAGAGCTTGGGGAGGGTGGGCATGGAGGGAA
TGCAGTATTATCTAATATTCAAGTTAGTTTTGTTGTTTCTGTTATTCCAAATAATGTAAA
TTCAAGCCTGCACAACACATGAATTTAGAATATTGGCAGTAGTTTGTTTTTGCTTAGTAA
AGGCAGTGATCTCACATATAGCTGCTGGTCCAGCATAAATCTGTACTACTCAGAACTTTT
TAACAGATAACATGCTACCATAGATAAACAGTAAGGATTTACCATATAGTACAGGGAACT
ATATTCAGTACCTTGTAATAACCTATAATGCAAAAGAATCTGAAGAAGAATATATATATG
TATATAACTGAATCACTTTGCTGTATATCTGAAACTAACACAAAATTGTAAATCAATTAT
ACTTTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCGTGGCTCGGCGATAATGAACCTGACTAGTATCCATGAGGATGGCCTCACTCAGTG
GGTTAAGGATCTGTTGCCACGAGCTGTGGTGTAGGTCGCGGACACGGCCCGGATCCCACA
TTGCTGTGGCTGTGGCACAGGCCAGCAGCTGTAGCTCCAATTTGACCCCTAGCCTGGACC
TTCCATGTGCTGTAAGTGCGGCCCTAAAAAATAAAAAAAAAAATTTTAAAAAGTCAGGGG
GAAGGATTGAGGTCAGCCAAAAGTCAGTTAAGAGCTTGGGGAGGGTGGGCATGGAGGGAA
TGCAGTATTATCTAATATTCAAGTTAGTTTTGTTGTTTCTGTTATTCCAAATAATGTAAA
TTCAAGCCTGCACAACACATGAATTTAGAATATTGGCAGTAGTTTGTTTTTGCTTAGTAA
AGGCAGTGATCTCACATATAGCTGCTGGTCCAGCATAAATCTGTACTACTCAGAACTTTT
TAACAGATAACATGCTACCATAGATAAACAGTAAGGATTTACCATATAGTACAGGGAACT
ATATTCAGTACCTTGTAATAACCTATAATGCAAAAGAATCTGAAGAAGAATATATATATG
TATATAACTGAATCACTTTGCTGTATATCTGAAACTAACACAAAATTGTAAATCAATTAT
ACTTTAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               479-670, gnl|bosTau2|chr1 (70416751-70416557)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               479-670, gnl|bosTau2|chr1 (70416751-70416557)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               fco (0.471624)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               ski (0.29347)
               

               
               csk (0.281492)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               clu (0.119646)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               ski (0.29347)
               

               
               csk (0.281492)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               clu (0.119646)

	fco (0.471624)
	gul (0.355177)
	rec (0.346141)
	ski (0.29347)
	csk (0.281492)
	cbe (0.239234)
	spc (0.226732)
	hea (0.204499)
	aor (0.195274)
	cmu (0.186393)
	sag (0.182715)
	fty (0.17584)
	fhi (0.169578)
	mga (0.160205)
	cag (0.151194)
	lun (0.150489)
	lnt (0.142308)
	cst (0.140036)
	nmm (0.132802)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	cly (0.120642)
	clu (0.119646)