Non-Coding RNA Search

Ss1.1-rcsk07_a20.5

Sequence:


               
               GGACATCACAGCAGAATGAAGACCTAAATGACCTCAGCAAATTCTCCTTTAAACTCATGG
GTACCCAGACTCTATTTCATGATTCACAACCAGGACCTCACACCTTCCTCCTCAGTAGAT
GGTACGATGCATCCATTTCAGTTTGTTTACTTTACACAATCCTCAGGAGTTTGTTGACTG
AACTGCACGCTCTCTATCGTGCCAAGAAAATAAATAAATAAATAAAAAGCACTGTGACAC
CAGAACAATGAACCTGCATAAACTTCATCTTCGACCTTAAGGACTTAGCTGGCCACATGA
GCTGATGGGCCCTCCACCATGCCACGGGAGAATGGGTTTACGCTCATTGCATTTACAAGA
CACATTTCATCTGCTGCTGAAACTGTGTGCGACAGAGCATCATTGTAAATTATTTCATAC
GAAACTGTTCGCGTTGGGTGGAGAGAGTATTAAATATTTAACATAGGTTTTTGATTTATA
TGTGTAATTTTTTTAATTAAAATGTAACTTTTCTTACAGCACATCTCTTTTTTGGATGTG
GAACTGAGGTATATACAGTGTTCTGTTGTAAAGAGTGGAGCAGATGCTTAAAACAAGGCT
AACAGCGTAGACTATGGTACGATCCTTGTTTTAAGATTGTAATTCAGAAAAATAATATAA
TAAGAATCATAGTGCCATAGATGGTTCTCAGTTGTATAGTTATATTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACATCACAGCAGAATGAAGACCTAAATGACCTCAGCAAATTCTCCTTTAAACTCATGG
GTACCCAGACTCTATTTCATGATTCACAACCAGGACCTCACACCTTCCTCCTCAGTAGAT
GGTACGATGCATCCATTTCAGTTTGTTTACTTTACACAATCCTCAGGAGTTTGTTGACTG
AACTGCACGCTCTCTATCGTGCCAAGAAAATAAATAAATAAATAAAAAGCACTGTGACAC
CAGAACAATGAACCTGCATAAACTTCATCTTCGACCTTAAGGACTTAGCTGGCCACATGA
GCTGATGGGCCCTCCACCATGCCACGGGAGAATGGGTTTACGCTCATTGCATTTACAAGA
CACATTTCATCTGCTGCTGAAACTGTGTGCGACAGAGCATCATTGTAAATTATTTCATAC
GAAACTGTTCGCGTTGGGTGGAGAGAGTATTAAATATTTAACATAGGTTTTTGATTTATA
TGTGTAATTTTTTTAATTAAAATGTAACTTTTCTTACAGCACATCTCTTTTTTGGATGTG
GAACTGAGGTATATACAGTGTTCTGTTGTAAAGAGTGGAGCAGATGCTTAAAACAAGGCT
AACAGCGTAGACTATGGTACGATCCTTGTTTTAAGATTGTAATTCAGAAAAATAATATAA
TAAGAATCATAGTGCCATAGATGGTTCTCAGTTGTATAGTTATATTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               526-676, + strand, RNAz p=0.537524

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               526-676, + strand, RNAz p=0.537524

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-708, gnl|bosTau2|chr11 (51715966-51715282)
               

               
               12-708, gnl|Hg17|chr2 (227426474-227425786)
               

               
               12-708, gnl|Mm7|chr1 (82452300-82451611)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-708, gnl|bosTau2|chr11 (51715966-51715282)
               

               
               12-708, gnl|Hg17|chr2 (227426474-227425786)
               

               
               12-708, gnl|Mm7|chr1 (82452300-82451611)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cte (0.58548)
               

               
               tes (0.207814)
               

               
               sin (0.174948)
               

               
               csk (0.140746)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               tes (0.207814)
               

               
               sin (0.174948)
               

               
               csk (0.140746)

	12-708, gnl\|bosTau2\|chr11 (51715966-51715282)
	12-708, gnl\|Hg17\|chr2 (227426474-227425786)
	12-708, gnl\|Mm7\|chr1 (82452300-82451611)