Non-Coding RNA Search

Ss1.1-rcsk08_m17.5

Sequence:


               
               TGATGCTGGGGGAAAAGAGACAAGAAATTGCTTCTTTTCTGTGCTTTCACTCAGTGGAGG
GGGAGAAAAGTCATATATTGGGCTACAGGAAGAAAAGCTAATAAATAGACTGGAAGTAAT
ATTCTGCCAGCAGGAACTCGACAGCTCCAGTTAAATGCTTTGATATAGTGGCTCCTTTGC
AGAGCAAAACCAAGATTTATTAAATTTCCTTCAAAGTGTTTATCTTAAAAGAAATTAAAT
ACAAGGTTTTTAATTATACTGCTGAATCAAATGTGAACGCCAAAGACCAAATCTTGTAGC
TTTTCTTTCCTCAATAAATATTAATGTTGGTAATTCTGGAGGGTAAAAATATAAATGGGT
TTTGGACAATGTTTTCACACTCGTTTGCGTTCTGAAAAAAAAAATTCCAAGGACAGCTAG
AGAGAAAGATGTTTGGCATGCTGAATTAGCTTGCATGTTTGTTAAAAGACAAAGACACGT
GTTTTGAAGATAAACCAGATCTGAACATGTATTTGTTGATTTTTGCAAAATAAAATTAGG
TTTAATTTTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGCTGGGGGAAAAGAGACAAGAAATTGCTTCTTTTCTGTGCTTTCACTCAGTGGAGG
GGGAGAAAAGTCATATATTGGGCTACAGGAAGAAAAGCTAATAAATAGACTGGAAGTAAT
ATTCTGCCAGCAGGAACTCGACAGCTCCAGTTAAATGCTTTGATATAGTGGCTCCTTTGC
AGAGCAAAACCAAGATTTATTAAATTTCCTTCAAAGTGTTTATCTTAAAAGAAATTAAAT
ACAAGGTTTTTAATTATACTGCTGAATCAAATGTGAACGCCAAAGACCAAATCTTGTAGC
TTTTCTTTCCTCAATAAATATTAATGTTGGTAATTCTGGAGGGTAAAAATATAAATGGGT
TTTGGACAATGTTTTCACACTCGTTTGCGTTCTGAAAAAAAAAATTCCAAGGACAGCTAG
AGAGAAAGATGTTTGGCATGCTGAATTAGCTTGCATGTTTGTTAAAAGACAAAGACACGT
GTTTTGAAGATAAACCAGATCTGAACATGTATTTGTTGATTTTTGCAAAATAAAATTAGG
TTTAATTTTATA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-114, - strand, RNAz p=0.831308
               

               
               437-552, - strand, RNAz p=0.990056

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-114, - strand, RNAz p=0.831308
               

               
               437-552, - strand, RNAz p=0.990056

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-552, gnl|bosTau2|chr1 (69313262-69312716)
               

               
               1-552, gnl|canFam2|chr34 (30330009-30330425)
               

               
               1-552, gnl|dasNov1|scaffold_9014 (4786-5217)
               

               
               1-552, gnl|echTel1|scaffold_273052 (7525-7107)
               

               
               1-552, gnl|galGal2|chr9 (21419996-21419634)
               

               
               1-552, gnl|hg17|chr3 (162545258-162545673)
               

               
               1-552, gnl|Hg17|chr3 (162545834-162545294)
               

               
               1-552, gnl|mm7|chr3 (69920510-69920939)
               

               
               1-552, gnl|Mm7|chr3 (69921096-69920549)
               

               
               1-552, gnl|monDom2|scaffold_52 (11817925-11817488)
               

               
               1-552, gnl|oryCun1|scaffold_150076 (8646-9070)
               

               
               1-552, gnl|panTro1|chr2 (165802631-165803046)
               

               
               1-552, gnl|rheMac2|chr2 (126344408-126343990)
               

               
               1-552, gnl|rn3|chr2 (159910501-159910936)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr1 (69313262-69312716)
               

               
               1-552, gnl|canFam2|chr34 (30330009-30330425)
               

               
               1-552, gnl|dasNov1|scaffold_9014 (4786-5217)
               

               
               1-552, gnl|echTel1|scaffold_273052 (7525-7107)
               

               
               1-552, gnl|galGal2|chr9 (21419996-21419634)
               

               
               1-552, gnl|hg17|chr3 (162545258-162545673)
               

               
               1-552, gnl|Hg17|chr3 (162545834-162545294)
               

               
               1-552, gnl|mm7|chr3 (69920510-69920939)
               

               
               1-552, gnl|Mm7|chr3 (69921096-69920549)
               

               
               1-552, gnl|monDom2|scaffold_52 (11817925-11817488)
               

               
               1-552, gnl|oryCun1|scaffold_150076 (8646-9070)
               

               
               1-552, gnl|panTro1|chr2 (165802631-165803046)
               

               
               1-552, gnl|rheMac2|chr2 (126344408-126343990)
               

               
               1-552, gnl|rn3|chr2 (159910501-159910936)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               fco (0.314416)
               

               
               rec (0.17307)
               

               
               csk (0.140746)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               rec (0.17307)
               

               
               csk (0.140746)
               

               
               bla (0.124347)

	1-114, - strand, RNAz p=0.831308
	437-552, - strand, RNAz p=0.990056

	1-552, gnl\|bosTau2\|chr1 (69313262-69312716)
	1-552, gnl\|canFam2\|chr34 (30330009-30330425)
	1-552, gnl\|dasNov1\|scaffold_9014 (4786-5217)
	1-552, gnl\|echTel1\|scaffold_273052 (7525-7107)
	1-552, gnl\|galGal2\|chr9 (21419996-21419634)
	1-552, gnl\|hg17\|chr3 (162545258-162545673)
	1-552, gnl\|Hg17\|chr3 (162545834-162545294)
	1-552, gnl\|mm7\|chr3 (69920510-69920939)
	1-552, gnl\|Mm7\|chr3 (69921096-69920549)
	1-552, gnl\|monDom2\|scaffold_52 (11817925-11817488)
	1-552, gnl\|oryCun1\|scaffold_150076 (8646-9070)
	1-552, gnl\|panTro1\|chr2 (165802631-165803046)
	1-552, gnl\|rheMac2\|chr2 (126344408-126343990)
	1-552, gnl\|rn3\|chr2 (159910501-159910936)