Non-Coding RNA Search

Ss1.1-rcsk11_b11.5

Sequence:


               
               GATCTCAGATATTTGGTAGAAGATTTTAGAGAAGGTGGTGCTGCTGTTCATTTTTGTTTT
AGTATTTGATGTCAAAACACTAAATTGCCATCAAACCTTATAGATTGGGAAGAAAATGAC
TTGGCAGAAAATGACTGCCCATAATGCCCAAGTATCAGCTAAGATGTTTGTTTAGTCTGA
AAGATTGCCAAACCCATCTGTGTTGAGGAAAGAACTTTGAGGTTGTCCCAAAGAAAACTA
AAACAACACAAAGCAAAACAAAAAGGCTCTTCCAGAAGTTGGAAATTCAATGTATTACAT
GCCCAGAATATGAAGGGTAAAGCTGAAGGCTTTTGGAAAGTTCCAGTGACAGTGCTTACA
GAATTCTGTGCCTTTGGAAAAAGTGATGGCCAACAAAGCAGCATTAGGACGCTGTTCAAT
CACAGTGAGCTGCCTTCTCCCCAAATAAATTGTACCTTGGAAAATTGAGGTGGATAAAAA
TATTTTAGTATTTGAGAATGTACTGTTCCTTCACCTCCCACCACATGTAAATCAAAGATG
CTCTGCAACGTCTTATGACACAGCTTGATAATCATTAATCTCAAGACTATTCTCCAACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCTCAGATATTTGGTAGAAGATTTTAGAGAAGGTGGTGCTGCTGTTCATTTTTGTTTT
AGTATTTGATGTCAAAACACTAAATTGCCATCAAACCTTATAGATTGGGAAGAAAATGAC
TTGGCAGAAAATGACTGCCCATAATGCCCAAGTATCAGCTAAGATGTTTGTTTAGTCTGA
AAGATTGCCAAACCCATCTGTGTTGAGGAAAGAACTTTGAGGTTGTCCCAAAGAAAACTA
AAACAACACAAAGCAAAACAAAAAGGCTCTTCCAGAAGTTGGAAATTCAATGTATTACAT
GCCCAGAATATGAAGGGTAAAGCTGAAGGCTTTTGGAAAGTTCCAGTGACAGTGCTTACA
GAATTCTGTGCCTTTGGAAAAAGTGATGGCCAACAAAGCAGCATTAGGACGCTGTTCAAT
CACAGTGAGCTGCCTTCTCCCCAAATAAATTGTACCTTGGAAAATTGAGGTGGATAAAAA
TATTTTAGTATTTGAGAATGTACTGTTCCTTCACCTCCCACCACATGTAAATCAAAGATG
CTCTGCAACGTCTTATGACACAGCTTGATAATCATTAATCTCAAGACTATTCTCCAACCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               150-261, - strand, RNAz p=0.572163

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-261, - strand, RNAz p=0.572163

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-600, gnl|bosTau2|chr7 (23575104-23574511)
               

               
               2-600, gnl|Hg17|chr4 (157014236-157014868)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-600, gnl|bosTau2|chr7 (23575104-23574511)
               

               
               2-600, gnl|Hg17|chr4 (157014236-157014868)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csk (0.140746)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)
               

               
               cty (0.10408)

	2-600, gnl\|bosTau2\|chr7 (23575104-23574511)
	2-600, gnl\|Hg17\|chr4 (157014236-157014868)