Non-Coding RNA Search

Ss1.1-rcsk11_f1.5

Sequence:


               
               ATACTTTGTCAACATTTATTGTTTTTGAAATTTGAGGAGCAGGGCATCCCACAGGCCACC
AAGTAGACACTCAGCTCAGGCGCCTCGGCAGCAGAGGTCTAATTTGCCTTAATATCAGTA
CTACACAATCAGGATGGTCTTAGTAGATTGATTTGATTTGAACAGAAAACAGAACAGGAG
CTACTCTTTGCAGGGAAGCCTGTGTAGCATAGATGATCATAATGGTTAATCGAATGCTGT
TGTTTGATTATAGATGAGACCAACTTGCCGGCTGATATCCCTAGTTATCTGTCATCTCAG
GGAACATTAGCTGACAGACAGGATGGGTATGTCTCCTCAGAAAGTGGAAGCCACCACCAA
TTCGTCACTTCTTCAGGAGGCGGATTTTTCTTACCACAGCACGACAGTAACGGTATGTGT
CACATTGACAACAGCAGTGAAGCCGACGTGGAAGCTGTCACAGACCCATTCCTTTGTCCC
TTTTTGGGACCCTCAGGCCCTGTGTATTTGAAGGGGAGTGTGTACGGCTCAGATCCTTTT
GAAGCCTGTCATTCAGGTTGTGGTCCTGACCCAACAACAGCTTTAATGGACCACTATGAG
CCCAGTTTGGTCAAGAAAAAGGAGTGTCGCCCCTGTCCTCATCCTGCAGAAGAGTCCTGC
GAGCAGCGTGTCAGTGATACAGGATGGCCTGCCCATCAGAGGAAGGTACTCAGCTCTTCT
CACTCGCAACACGAAGGCCCCGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACTTTGTCAACATTTATTGTTTTTGAAATTTGAGGAGCAGGGCATCCCACAGGCCACC
AAGTAGACACTCAGCTCAGGCGCCTCGGCAGCAGAGGTCTAATTTGCCTTAATATCAGTA
CTACACAATCAGGATGGTCTTAGTAGATTGATTTGATTTGAACAGAAAACAGAACAGGAG
CTACTCTTTGCAGGGAAGCCTGTGTAGCATAGATGATCATAATGGTTAATCGAATGCTGT
TGTTTGATTATAGATGAGACCAACTTGCCGGCTGATATCCCTAGTTATCTGTCATCTCAG
GGAACATTAGCTGACAGACAGGATGGGTATGTCTCCTCAGAAAGTGGAAGCCACCACCAA
TTCGTCACTTCTTCAGGAGGCGGATTTTTCTTACCACAGCACGACAGTAACGGTATGTGT
CACATTGACAACAGCAGTGAAGCCGACGTGGAAGCTGTCACAGACCCATTCCTTTGTCCC
TTTTTGGGACCCTCAGGCCCTGTGTATTTGAAGGGGAGTGTGTACGGCTCAGATCCTTTT
GAAGCCTGTCATTCAGGTTGTGGTCCTGACCCAACAACAGCTTTAATGGACCACTATGAG
CCCAGTTTGGTCAAGAAAAAGGAGTGTCGCCCCTGTCCTCATCCTGCAGAAGAGTCCTGC
GAGCAGCGTGTCAGTGATACAGGATGGCCTGCCCATCAGAGGAAGGTACTCAGCTCTTCT
CACTCGCAACACGAAGGCCCCGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55638353|ref|XP_509180.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55638353|ref|XP_509180.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               28-420, gnl|bosTau2|chrX (14977667-14978054)
               

               
               28-420, gnl|Hg17|chr12 (57556890-57556486)
               

               
               28-420, gnl|Mm7|chr10 (125503078-125503442)
               


               
               555-744, gnl|bosTau2|chrX (14979978-14980167)
               

               
               555-744, gnl|Hg17|chr12 (57554381-57554192)
               

               
               555-744, gnl|Mm7|chr10 (125505625-125505808)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-420, gnl|bosTau2|chrX (14977667-14978054)
               

               
               28-420, gnl|Hg17|chr12 (57556890-57556486)
               

               
               28-420, gnl|Mm7|chr10 (125503078-125503442)
               


               
               555-744, gnl|bosTau2|chrX (14979978-14980167)
               

               
               555-744, gnl|Hg17|chr12 (57554381-57554192)
               

               
               555-744, gnl|Mm7|chr10 (125505625-125505808)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	28-420, gnl\|bosTau2\|chrX (14977667-14978054)
	28-420, gnl\|Hg17\|chr12 (57556890-57556486)
	28-420, gnl\|Mm7\|chr10 (125503078-125503442)

	555-744, gnl\|bosTau2\|chrX (14979978-14980167)
	555-744, gnl\|Hg17\|chr12 (57554381-57554192)
	555-744, gnl\|Mm7\|chr10 (125505625-125505808)