Non-Coding RNA Search

Ss1.1-rcsk11_p2.5

Sequence:


               
               AGGGAAGAAGCCCCACATAAAGAAACCCCTTAACGCGTTCATGTTGTATATGAAGGAAAT
GAGAGCGAAGGTCGTAGCTGAGTGCACGTTGAAAGAAAGTGCAGCCATCAACCAGATCCT
GGGCCGAAGGTGGCACGCACTGTCCAGAGAAGAGCAAGCGAAGTACTACGAGCTGGCCCG
GAAGGAGCGACAGCTTCACATGCAGCTGTACCCCGGCTGGTCCGCACGGGATAACTATGG
GAAAAAGAAGAAGAGGAAAAGGGACAAGCAGCCCGGGGAGACCAATGAACACAGCGAATG
TTTCCTAAATCCTTGCCTTTCACTTCCTCCGATTACAGGTGCTAATGTCATTTTGAGTCA
TTAAAATAGTTGATAAACTGTTTTTTTAATTTTTCTTGCCATTATAGTTTTATTAACATG
AGACACGTATGACTTTTGAACATTCTTTAAAATGACCATCTACACGGTTTCATATGTTTC
AGTAGATTTTTTTTTCAGTTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGAAGAAGCCCCACATAAAGAAACCCCTTAACGCGTTCATGTTGTATATGAAGGAAAT
GAGAGCGAAGGTCGTAGCTGAGTGCACGTTGAAAGAAAGTGCAGCCATCAACCAGATCCT
GGGCCGAAGGTGGCACGCACTGTCCAGAGAAGAGCAAGCGAAGTACTACGAGCTGGCCCG
GAAGGAGCGACAGCTTCACATGCAGCTGTACCCCGGCTGGTCCGCACGGGATAACTATGG
GAAAAAGAAGAAGAGGAAAAGGGACAAGCAGCCCGGGGAGACCAATGAACACAGCGAATG
TTTCCTAAATCCTTGCCTTTCACTTCCTCCGATTACAGGTGCTAATGTCATTTTGAGTCA
TTAAAATAGTTGATAAACTGTTTTTTTAATTTTTCTTGCCATTATAGTTTTATTAACATG
AGACACGTATGACTTTTGAACATTCTTTAAAATGACCATCTACACGGTTTCATATGTTTC
AGTAGATTTTTTTTTCAGTTGCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57162521|emb|CAI40405.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57162521|emb|CAI40405.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               5-131, - strand, RNAz p=0.963236

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-131, - strand, RNAz p=0.963236

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-131, gnl|bosTau2|chr11 (34804286-34804159)
               

               
               5-131, gnl|Hg17|chr2 (85445021-85445148)
               

               
               5-131, gnl|Mm7|chr6 (72649271-72649144)
               


               
               287-495, gnl|bosTau2|chr26 (22514192-22514400)
               

               
               287-495, gnl|Hg17|chr10 (114908415-114908623)
               

               
               287-495, gnl|Mm7|chr19 (55839505-55839721)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-131, gnl|bosTau2|chr11 (34804286-34804159)
               

               
               5-131, gnl|Hg17|chr2 (85445021-85445148)
               

               
               5-131, gnl|Mm7|chr6 (72649271-72649144)
               


               
               287-495, gnl|bosTau2|chr26 (22514192-22514400)
               

               
               287-495, gnl|Hg17|chr10 (114908415-114908623)
               

               
               287-495, gnl|Mm7|chr19 (55839505-55839721)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               csk (0.140746)

	5-131, gnl\|bosTau2\|chr11 (34804286-34804159)
	5-131, gnl\|Hg17\|chr2 (85445021-85445148)
	5-131, gnl\|Mm7\|chr6 (72649271-72649144)

	287-495, gnl\|bosTau2\|chr26 (22514192-22514400)
	287-495, gnl\|Hg17\|chr10 (114908415-114908623)
	287-495, gnl\|Mm7\|chr19 (55839505-55839721)