Non-Coding RNA Search

Ss1.1-rcsk12_d15.5

Sequence:


               
               CTTTATCCCCATACAATGGAGAATGTGCCACTTGGCTAATCATATGCTTTCAAAATTACA
AGTTCAGGGGTGACAGGAAGGAGGGGCCATAGTGATCCCAGAGAGGCTGGCAGAAAGGCG
AATCACACGTGAGCACCAGCAGGTTAAAAATCTGAAGGGTGGGCCTGACAGTTAGGACTG
AAGATTTTACAGCATGCCACTTGTGCAATACCAGGTCCTAGGGTAAAACTTTCAAGGTCA
AGAGGGCTGTCAGGAGACGGTTACCACTCAAATGCTTGCCACTGAACTTGTAATTGAATG
ACTTAGTTATGCTTAATGTAATTGGGCAACTTTTTTAGCACTTTGGAAAGAGTCATCAAT
CTTTCTGGTAAATTATAAAAGTTTCTGAGTGAGAAAAGGTGTGTTTGGAGTTTGTTTGAC
TTTTTATATTATTATTATTGTTATTAATAAAGAAAAATCTACAGCATTTTTCAGATTCCG
CCGAGGTCACATGTACCCCTGAATTTGGTTTGCAGTTTGATACTCAGGGAAGGATGTATT
CCATAGATATCCTTTCCGTGTAAAACACTAACGTCTTTGAGATATTCACCTGCCAACTAA
CTTCAATTCTGTTTTCACTATGCATTCTTCAATGAAAGCTAGCTTATTTTTCCATATAGT
AATGCAGTTAGAGTTCTCAGCACTTTCTTCTCTCCTTTTTTTTAACTCCTCATGTTATGT
TCAGATGATCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTATCCCCATACAATGGAGAATGTGCCACTTGGCTAATCATATGCTTTCAAAATTACA
AGTTCAGGGGTGACAGGAAGGAGGGGCCATAGTGATCCCAGAGAGGCTGGCAGAAAGGCG
AATCACACGTGAGCACCAGCAGGTTAAAAATCTGAAGGGTGGGCCTGACAGTTAGGACTG
AAGATTTTACAGCATGCCACTTGTGCAATACCAGGTCCTAGGGTAAAACTTTCAAGGTCA
AGAGGGCTGTCAGGAGACGGTTACCACTCAAATGCTTGCCACTGAACTTGTAATTGAATG
ACTTAGTTATGCTTAATGTAATTGGGCAACTTTTTTAGCACTTTGGAAAGAGTCATCAAT
CTTTCTGGTAAATTATAAAAGTTTCTGAGTGAGAAAAGGTGTGTTTGGAGTTTGTTTGAC
TTTTTATATTATTATTATTGTTATTAATAAAGAAAAATCTACAGCATTTTTCAGATTCCG
CCGAGGTCACATGTACCCCTGAATTTGGTTTGCAGTTTGATACTCAGGGAAGGATGTATT
CCATAGATATCCTTTCCGTGTAAAACACTAACGTCTTTGAGATATTCACCTGCCAACTAA
CTTCAATTCTGTTTTCACTATGCATTCTTCAATGAAAGCTAGCTTATTTTTCCATATAGT
AATGCAGTTAGAGTTCTCAGCACTTTCTTCTCTCCTTTTTTTTAACTCCTCATGTTATGT
TCAGATGATCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               447-640, + strand, RNAz p=0.939416

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               447-640, + strand, RNAz p=0.939416

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-732, gnl|bosTau2|chr17 (7911858-7912593)
               

               
               1-732, gnl|Hg17|chr4 (147037327-147036574)
               

               
               1-732, gnl|Mm7|chr8 (77733005-77733802)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr17 (7911858-7912593)
               

               
               1-732, gnl|Hg17|chr4 (147037327-147036574)
               

               
               1-732, gnl|Mm7|chr8 (77733005-77733802)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ski (0.29347)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

	1-732, gnl\|bosTau2\|chr17 (7911858-7912593)
	1-732, gnl\|Hg17\|chr4 (147037327-147036574)
	1-732, gnl\|Mm7\|chr8 (77733005-77733802)

	ski (0.29347)
	cmu (0.186393)
	gul (0.177588)
	lin (0.145603)
	csk (0.140746)
	kid (0.129735)
	bla (0.124347)