Non-Coding RNA Search

Ss1.1-rcsk12_i7.5

Sequence:


               
               TTGCCATTGCCCCAAATGGAGCCTTACAGCTGGCCAGTCCAGGCACAGATGGAGTACAGG
GACTCCAGACATTAACCATGACAAATTCAGGCAGTACTCAGCAAGGTACAACAATTCTCC
AGTATGCACAGACCTCTGATGGACAGCAAATACTTGTGCCCAGCAACCAAGTGGTTGTAC
AAACTGCATCAGGAGATATGCAGACGTATCAGATCCGTACCACGCCTTCAGCTACTTCCC
TGCCACAGACTGTGGTGATGACATCTCCTGTGACCCTCACATCTCAGTCAACGAAGACAG
ATGACCCCCAATTGAAAAGAGAAATAAGGTTGATGAAAAACAGAGAAGCTGCTCGAGAAT
GTCGCAGAAAGAAGAAAGAATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCCATTGCCCCAAATGGAGCCTTACAGCTGGCCAGTCCAGGCACAGATGGAGTACAGG
GACTCCAGACATTAACCATGACAAATTCAGGCAGTACTCAGCAAGGTACAACAATTCTCC
AGTATGCACAGACCTCTGATGGACAGCAAATACTTGTGCCCAGCAACCAAGTGGTTGTAC
AAACTGCATCAGGAGATATGCAGACGTATCAGATCCGTACCACGCCTTCAGCTACTTCCC
TGCCACAGACTGTGGTGATGACATCTCCTGTGACCCTCACATCTCAGTCAACGAAGACAG
ATGACCCCCAATTGAAAAGAGAAATAAGGTTGATGAAAAACAGAGAAGCTGCTCGAGAAT
GTCGCAGAAAGAAGAAAGAATATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3002966|gb|AAC72029.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3002966|gb|AAC72029.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-182, gnl|bosTau2|chr13 (8897443-8897630)
               

               
               1-182, gnl|Hg17|chr10 (35517134-35517321)
               

               
               1-182, gnl|Mm7|chr18 (3454020-3453833)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-182, gnl|bosTau2|chr13 (8897443-8897630)
               

               
               1-182, gnl|Hg17|chr10 (35517134-35517321)
               

               
               1-182, gnl|Mm7|chr18 (3454020-3453833)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               tra (0.123092)

	1-182, gnl\|bosTau2\|chr13 (8897443-8897630)
	1-182, gnl\|Hg17\|chr10 (35517134-35517321)
	1-182, gnl\|Mm7\|chr18 (3454020-3453833)

	ece (0.229305)
	csp (0.161186)
	spl (0.143184)
	csk (0.140746)
	tra (0.123092)