Non-Coding RNA Search

Ss1.1-rcsk13_d17.5

Sequence:


               
               CTTGCCTGCCCTTCCCTGGCCCGTCATTGTCGTTGGTCATCCTGTTGCCACGGGCTCTTG
ATCTTCGGAGCTTTCCGGTGGCGGGTGGCATCTGGGCAGGGCCGCTGCGGCTGGGGAGGG
CCCCCCCCCCCCCCCGACTTCCCTGCTAGTTTTCTGGAATTCGTTTCCTTTGGCTTTTTC
TGTTTTCCCTCTAGAAGGGGCTTCTCCGACTCGAACTGCAGAATGCATGTCCATTGGGGG
GCTCTGGGTGGGCTGGGGACCAGGCACCTGACCCCTGTGGCCTGGCCTTATCACCGACAC
GACCTCTCGCCAGCCACTCAGCCTGCCCTCTTCCCTTTAAACTTCATGTCTGGTTGGCAT
ATGCCCCTTGGATGCACTAAAATTGCTCTTATTTGCTTCTGGACTGGCCATGAAGTGAGG
AGATGGTTATTTAAAGAGAATTCCGTATTTATTTGACACACACAAAAAAATCCAGTTAAT
ATATTAATGTGAAATAAACCCTGTTTGCACCTTGATCTGTCTGCTGAAAATGTGAACTAG
TAAACACGAAGTGACTGGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCCTGCCCTTCCCTGGCCCGTCATTGTCGTTGGTCATCCTGTTGCCACGGGCTCTTG
ATCTTCGGAGCTTTCCGGTGGCGGGTGGCATCTGGGCAGGGCCGCTGCGGCTGGGGAGGG
CCCCCCCCCCCCCCCGACTTCCCTGCTAGTTTTCTGGAATTCGTTTCCTTTGGCTTTTTC
TGTTTTCCCTCTAGAAGGGGCTTCTCCGACTCGAACTGCAGAATGCATGTCCATTGGGGG
GCTCTGGGTGGGCTGGGGACCAGGCACCTGACCCCTGTGGCCTGGCCTTATCACCGACAC
GACCTCTCGCCAGCCACTCAGCCTGCCCTCTTCCCTTTAAACTTCATGTCTGGTTGGCAT
ATGCCCCTTGGATGCACTAAAATTGCTCTTATTTGCTTCTGGACTGGCCATGAAGTGAGG
AGATGGTTATTTAAAGAGAATTCCGTATTTATTTGACACACACAAAAAAATCCAGTTAAT
ATATTAATGTGAAATAAACCCTGTTTGCACCTTGATCTGTCTGCTGAAAATGTGAACTAG
TAAACACGAAGTGACTGGAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               231-345, - strand, RNAz p=0.520573

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-345, - strand, RNAz p=0.520573

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-559, gnl|bosTau2|chr19 (49693801-49694339)
               

               
               10-559, gnl|Hg17|chr17 (71353893-71353375)
               

               
               10-559, gnl|Mm7|chr11 (116188076-116187618)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-559, gnl|bosTau2|chr19 (49693801-49694339)
               

               
               10-559, gnl|Hg17|chr17 (71353893-71353375)
               

               
               10-559, gnl|Mm7|chr11 (116188076-116187618)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               ill (0.351185)
               

               
               fco (0.314416)
               

               
               cag (0.302389)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               cov (0.264306)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               fco (0.314416)
               

               
               cag (0.302389)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               cov (0.264306)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	10-559, gnl\|bosTau2\|chr19 (49693801-49694339)
	10-559, gnl\|Hg17\|chr17 (71353893-71353375)
	10-559, gnl\|Mm7\|chr11 (116188076-116187618)

	ill (0.351185)
	fco (0.314416)
	cag (0.302389)
	hyp (0.285673)
	pty (0.285429)
	cga (0.279096)
	che (0.272628)
	cov (0.264306)
	sto (0.179824)
	fbs (0.175346)
	fhi (0.169578)
	cki (0.165235)
	mga (0.160205)
	lnt (0.142308)
	csk (0.140746)
	nmm (0.132802)
	cly (0.120642)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)