Non-Coding RNA Search

Ss1.1-rcsk13_f4.5

Sequence:


               
               CCAGAATCTATTCTTTAAGATAGGAAATGTCAGCTAAGAATGGTGGGACTGAGAATACTT
ATTTTAGTTGATGTCTCTTGCTGTATTATTTTGAGGCTTCTTTCCTTAACTGATTTATGA
CTTTTGAGACTAATTGTGTGGAGCATTACCATTTTATCTTGAATGCTTTGTTAAAAAAAT
TTTTGTGGCTAAATGTTTAAAAAAAGAATCGTGTGTTTTTTGTGGTACAGAGTTATGTTT
ATGGTTATTAAAACTTTGAAAATGAGGAGATCCAATCATTTGAATACCAGGATGTTTCTT
GTATAGAACCAGTAGTACTGTAACCTTAGGTTGGTCAAAACAGTATTGTGGAGTGAAGAA
AGTAATAACCATATGTTAATATCTTTGAATTAATATAAAGAAAGGATTTGTTTTAGAAAT
TTACCTTGAGTTGTTTTTGTTTAAGTCTATGGGAAGTCCACCATCAGAAAATTTACAGAA
GCACACAGTTTTCTAAAAAGTGGCATTTGTTGGGATTGTGCATTTGTAATTTTAACATTG
ATTTGGATTTACAGACTTGCCTTTGTTTATCAGTATATTAATAAGTAATGCCTATCTTAT
TAGCAACTTGAGTACTTTATTTAAATGTTAATTTGGTAATTTTCCCCCCTTCTGGACAGG
TTGGTGAAAATTGCCCCTCAATATTATGACATGAGCAATTTCCCACAGTGTGAAGCAAAG
AGACAGTTGGACCGCATCATTGCCAAACTGCAATCCAAGGAATATTCACAGTACTGAATT
CAATGCTTAGAACTGAAGTTATTCAGAGGACAGCTTTAAAAGATGAATGAACTCAAAAGT
TCAAGTTGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAATCTATTCTTTAAGATAGGAAATGTCAGCTAAGAATGGTGGGACTGAGAATACTT
ATTTTAGTTGATGTCTCTTGCTGTATTATTTTGAGGCTTCTTTCCTTAACTGATTTATGA
CTTTTGAGACTAATTGTGTGGAGCATTACCATTTTATCTTGAATGCTTTGTTAAAAAAAT
TTTTGTGGCTAAATGTTTAAAAAAAGAATCGTGTGTTTTTTGTGGTACAGAGTTATGTTT
ATGGTTATTAAAACTTTGAAAATGAGGAGATCCAATCATTTGAATACCAGGATGTTTCTT
GTATAGAACCAGTAGTACTGTAACCTTAGGTTGGTCAAAACAGTATTGTGGAGTGAAGAA
AGTAATAACCATATGTTAATATCTTTGAATTAATATAAAGAAAGGATTTGTTTTAGAAAT
TTACCTTGAGTTGTTTTTGTTTAAGTCTATGGGAAGTCCACCATCAGAAAATTTACAGAA
GCACACAGTTTTCTAAAAAGTGGCATTTGTTGGGATTGTGCATTTGTAATTTTAACATTG
ATTTGGATTTACAGACTTGCCTTTGTTTATCAGTATATTAATAAGTAATGCCTATCTTAT
TAGCAACTTGAGTACTTTATTTAAATGTTAATTTGGTAATTTTCCCCCCTTCTGGACAGG
TTGGTGAAAATTGCCCCTCAATATTATGACATGAGCAATTTCCCACAGTGTGAAGCAAAG
AGACAGTTGGACCGCATCATTGCCAAACTGCAATCCAAGGAATATTCACAGTACTGAATT
CAATGCTTAGAACTGAAGTTATTCAGAGGACAGCTTTAAAAGATGAATGAACTCAAAAGT
TCAAGTTGTGCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-852, gnl|bosTau2|chr6 (23625182-23626059)
               

               
               2-852, gnl|Hg17|chr4 (24206590-24205742)
               

               
               2-852, gnl|Mm7|chr5 (51524652-51523898)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-852, gnl|bosTau2|chr6 (23625182-23626059)
               

               
               2-852, gnl|Hg17|chr4 (24206590-24205742)
               

               
               2-852, gnl|Mm7|chr5 (51524652-51523898)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               sin (0.174948)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               eje (0.0988338)

	2-852, gnl\|bosTau2\|chr6 (23625182-23626059)
	2-852, gnl\|Hg17\|chr4 (24206590-24205742)
	2-852, gnl\|Mm7\|chr5 (51524652-51523898)