Non-Coding RNA Search

Ss1.1-rcsk14_e19.5

Sequence:


               
               GACAAACTAGGCCAGTGGTTTTCCAACTGCTTGGCAGAGCCCTGAAATTTCCTAGGGGTT
GCCTCAGGAGTCCTTGGGGGAGATGAATAGGAGGGGGGAGGCGCTGACCTAGGCCATTTG
CTCTCAAACAGAACAACTCCCCTATAGCTGTCTTATATATCGGGGTTCAGGGTAAGATTT
TATTTGCATTAAGGGGTTTGCTGCTGAAAAAAAAAGTTGGAAAGCCACTGACTAGACCAT
CAGCTCCAAATTGGAGCCTGTGCTGCCCCAGGTTTGGGGCAGACTCTTCCCCTCCTCTTT
ACCACAGGACACCCGGCCCTGACAGCTCTCTTGGGAGCCTTCCGCAAACAGGGGTACAGG
GACCGTGGTCAGGTTATTGGAAAGCCCTGCTCTGAGGCCTTCACACCTGGATGGAAGAGG
CTGTTTTCTGAGAGGGTGAAGGGCTTGGTCTGGATTCCCAGAAGCATAGCTTGGATGGGA
CCACAGTGGGCAGTTTTGATCTGTCCTGCCCTTCTTAGCTTGATGGGCAGTGGAAACCCC
AGAGACTCTTTGTCAGGGAAAACTAGCGACTCTCTTCTAGAGCCATATAGTTCCTTGGGA
TTAGCTCTTGGCCACAAAGGCTGAGTATGGCTCCCAATTTTTAAATCAATTTCACTTTTT
AAAAAGTAAGGGAAATAAATCTTATTGCCATTTTTCAGAGATTAAATAGGTGGAGAGGGT
GTTTCTTGCTCTCCAGAACCCAAAGGGACAAATAGGGACTTTATTTAGGCCAAGGAAGGA
GCAGAAGTAGGGCAACTAGGTCCTGCACTTATTAATCCCACTCCCCACTTATTCTAGGGC
ATACACTATTTTACTTTTTTAAATCATAAAGCGGCGGGAGAACAGATTTGGTTAGTTTAG
AAGAAAAGAAAAAGCTCTATAAATATAAATATATATTCCTGTATTTTTATTTAATAATTT
ATAAATACCAAGTTCATTTGACTTTTATTTTTGTGTAATATGTAATGGTCGTATTAAAAA
TAAATAAATAAAGCCCAGAAGTTTAATGAGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAAACTAGGCCAGTGGTTTTCCAACTGCTTGGCAGAGCCCTGAAATTTCCTAGGGGTT
GCCTCAGGAGTCCTTGGGGGAGATGAATAGGAGGGGGGAGGCGCTGACCTAGGCCATTTG
CTCTCAAACAGAACAACTCCCCTATAGCTGTCTTATATATCGGGGTTCAGGGTAAGATTT
TATTTGCATTAAGGGGTTTGCTGCTGAAAAAAAAAGTTGGAAAGCCACTGACTAGACCAT
CAGCTCCAAATTGGAGCCTGTGCTGCCCCAGGTTTGGGGCAGACTCTTCCCCTCCTCTTT
ACCACAGGACACCCGGCCCTGACAGCTCTCTTGGGAGCCTTCCGCAAACAGGGGTACAGG
GACCGTGGTCAGGTTATTGGAAAGCCCTGCTCTGAGGCCTTCACACCTGGATGGAAGAGG
CTGTTTTCTGAGAGGGTGAAGGGCTTGGTCTGGATTCCCAGAAGCATAGCTTGGATGGGA
CCACAGTGGGCAGTTTTGATCTGTCCTGCCCTTCTTAGCTTGATGGGCAGTGGAAACCCC
AGAGACTCTTTGTCAGGGAAAACTAGCGACTCTCTTCTAGAGCCATATAGTTCCTTGGGA
TTAGCTCTTGGCCACAAAGGCTGAGTATGGCTCCCAATTTTTAAATCAATTTCACTTTTT
AAAAAGTAAGGGAAATAAATCTTATTGCCATTTTTCAGAGATTAAATAGGTGGAGAGGGT
GTTTCTTGCTCTCCAGAACCCAAAGGGACAAATAGGGACTTTATTTAGGCCAAGGAAGGA
GCAGAAGTAGGGCAACTAGGTCCTGCACTTATTAATCCCACTCCCCACTTATTCTAGGGC
ATACACTATTTTACTTTTTTAAATCATAAAGCGGCGGGAGAACAGATTTGGTTAGTTTAG
AAGAAAAGAAAAAGCTCTATAAATATAAATATATATTCCTGTATTTTTATTTAATAATTT
ATAAATACCAAGTTCATTTGACTTTTATTTTTGTGTAATATGTAATGGTCGTATTAAAAA
TAAATAAATAAAGCCCAGAAGTTTAATGAGAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-121, - strand, RNAz p=0.727171
               

               
               502-740, + strand, RNAz p=0.983655

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, - strand, RNAz p=0.727171
               

               
               502-740, + strand, RNAz p=0.983655

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004050, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004050, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1052, gnl|bosTau2|chr10 (13805918-13804874)
               

               
               3-1052, gnl|Hg17|chr14 (22849751-22850800)
               

               
               3-1052, gnl|Mm7|chr14 (49754141-49755168)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1052, gnl|bosTau2|chr10 (13805918-13804874)
               

               
               3-1052, gnl|Hg17|chr14 (22849751-22850800)
               

               
               3-1052, gnl|Mm7|chr14 (49754141-49755168)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               csk (0.562984)
               

               
               pro (0.512033)
               

               
               sug (0.381874)
               

               
               sag (0.36543)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.562984)
               

               
               pro (0.512033)
               

               
               sug (0.381874)
               

               
               sag (0.36543)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	3-121, - strand, RNAz p=0.727171
	502-740, + strand, RNAz p=0.983655

	3-1052, gnl\|bosTau2\|chr10 (13805918-13804874)
	3-1052, gnl\|Hg17\|chr14 (22849751-22850800)
	3-1052, gnl\|Mm7\|chr14 (49754141-49755168)

	csk (0.562984)
	pro (0.512033)
	sug (0.381874)
	sag (0.36543)
	cte (0.29274)
	cbe (0.239234)
	aor (0.195274)
	cmu (0.186393)
	gul (0.177588)
	cki (0.165235)
	isp (0.150376)
	fat (0.147427)
	ssp (0.13552)
	lyg (0.133103)
	pgl (0.118483)
	spc (0.113366)