Ss1.1-rcsk15_e19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTACATCTGGGCTTCAGGCAAAGATTCAAGATGCTAAAGAGAAAGTCCAGATCAATATGG TAAAATTAGCAGCCGTGTTGAAGAACTCAACAGATGTTTCCCCAGACCTGGATGTCAGGC TGAAGGTGGAAGAATCACAGAAGGAACTTGAATCATACATTACAAGGGCTGAGCAGTTAC TTGGCCAAAGAGAGAGCCAGAGCAGACTAATTTCAAAATACAAGGAAGCACTAATAATTT TTAATACTAAAAGTCTGGCCAAGTATTTGAAAGCTATTGAAGAACTGAAAAGCAAAGTAG CTGAGGATGTAAAACTGTCTTTGGAAGAAAAGAGCAGAGATGTCTGTGCCAAATGGGAGT CTCTTCATCATGAAATGTCTTTGTATATTCAACAACTCAAAATAGACATTGAAAAAGGAA AACTTAGTGACAATATTGCAAAACTTGAAAAACAAATAAATAAAGAAAAGAAACTAATTC GCAGAGGAAGGACCAAGGGTCTCATCAAGGAGCATGAGGCCTGCTTTTCTGAGGAAGGCA GCCTGTACCAGCTTGATCGCCACATGGAGGTCCTGCGGGAGCTGTGTGAGGAGCTGACTT CACAGAAGAGTCAACAGGAAGTGAGGAGAGCACTCAGAGATTACGAACAAAAGATAGAAA GGCTGCGGAGATGCGCTTCGGAGATCCAGACGACACTGCAGCCTGCGGCGGGTGGCACAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTACATCTGGGCTTCAGGCAAAGATTCAAGATGCTAAAGAGAAAGTCCAGATCAATATGG TAAAATTAGCAGCCGTGTTGAAGAACTCAACAGATGTTTCCCCAGACCTGGATGTCAGGC TGAAGGTGGAAGAATCACAGAAGGAACTTGAATCATACATTACAAGGGCTGAGCAGTTAC TTGGCCAAAGAGAGAGCCAGAGCAGACTAATTTCAAAATACAAGGAAGCACTAATAATTT TTAATACTAAAAGTCTGGCCAAGTATTTGAAAGCTATTGAAGAACTGAAAAGCAAAGTAG CTGAGGATGTAAAACTGTCTTTGGAAGAAAAGAGCAGAGATGTCTGTGCCAAATGGGAGT CTCTTCATCATGAAATGTCTTTGTATATTCAACAACTCAAAATAGACATTGAAAAAGGAA AACTTAGTGACAATATTGCAAAACTTGAAAAACAAATAAATAAAGAAAAGAAACTAATTC GCAGAGGAAGGACCAAGGGTCTCATCAAGGAGCATGAGGCCTGCTTTTCTGAGGAAGGCA GCCTGTACCAGCTTGATCGCCACATGGAGGTCCTGCGGGAGCTGTGTGAGGAGCTGACTT CACAGAAGAGTCAACAGGAAGTGAGGAGAGCACTCAGAGATTACGAACAAAAGATAGAAA GGCTGCGGAGATGCGCTTCGGAGATCCAGACGACACTGCAGCCTGCGGCGGGTGGCACAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 514-632, + strand, RNAz p=0.545807 | |
| 514-619, + strand, RNAz p=0.737838 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 514-632, + strand, RNAz p=0.545807 | |
| 514-619, + strand, RNAz p=0.737838 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AF435011, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 48-225, gnl|bosTau2|chr10 (52070690-52070513) | |
| 48-225, gnl|canFam2|chr8 (41472400-41472741) | |
| 48-225, gnl|echTel1|scaffold_310752 (1155-1458) | |
| 48-225, gnl|galGal2|chr5 (49941660-49941382) | |
| 48-225, gnl|hg17|chr14 (63527318-63527649) | |
| 48-225, gnl|Hg17|chr14 (63527410-63527587) | |
| 48-225, gnl|loxAfr1|scaffold_27231 (21004-20702) | |
| 48-225, gnl|mm7|chr12 (73877331-73877648) | |
| 48-225, gnl|Mm7|chr12 (73877420-73877597) | |
| 48-225, gnl|monDom2|scaffold_8 (77559463-77559768) | |
| 48-225, gnl|oryCun1|scaffold_157505 (3734-4113) | |
| 48-225, gnl|panTro1|chr15 (63096581-63096912) | |
| 48-225, gnl|rheMac2|chr7 (127011285-127011625) | |
| 48-225, gnl|rn3|chr6 (98528706-98529019) | |
| 514-719, gnl|bosTau2|chr10 (52063428-52063223) | |
| 514-719, gnl|canFam2|chr8 (41479711-41480035) | |
| 514-719, gnl|echTel1|scaffold_310752 (7333-7668) | |
| 514-719, gnl|hg17|chr14 (63533402-63533722) | |
| 514-719, gnl|Hg17|chr14 (63533413-63533618) | |
| 514-719, gnl|loxAfr1|scaffold_157089 (4309-3983) | |
| 514-719, gnl|mm7|chr12 (73883714-73884041) | |
| 514-719, gnl|Mm7|chr12 (73883725-73883930) | |
| 514-719, gnl|monDom2|scaffold_8 (77571127-77571464) | |
| 514-719, gnl|oryCun1|scaffold_157505 (9838-10145) | |
| 514-719, gnl|panTro1|chr15 (63102647-63102967) | |
| 514-719, gnl|rheMac2|chr7 (127017646-127017966) | |
| 514-719, gnl|rn3|chr6 (98535545-98535869) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 48-225, gnl|bosTau2|chr10 (52070690-52070513) | |
| 48-225, gnl|canFam2|chr8 (41472400-41472741) | |
| 48-225, gnl|echTel1|scaffold_310752 (1155-1458) | |
| 48-225, gnl|galGal2|chr5 (49941660-49941382) | |
| 48-225, gnl|hg17|chr14 (63527318-63527649) | |
| 48-225, gnl|Hg17|chr14 (63527410-63527587) | |
| 48-225, gnl|loxAfr1|scaffold_27231 (21004-20702) | |
| 48-225, gnl|mm7|chr12 (73877331-73877648) | |
| 48-225, gnl|Mm7|chr12 (73877420-73877597) | |
| 48-225, gnl|monDom2|scaffold_8 (77559463-77559768) | |
| 48-225, gnl|oryCun1|scaffold_157505 (3734-4113) | |
| 48-225, gnl|panTro1|chr15 (63096581-63096912) | |
| 48-225, gnl|rheMac2|chr7 (127011285-127011625) | |
| 48-225, gnl|rn3|chr6 (98528706-98529019) | |
| 514-719, gnl|bosTau2|chr10 (52063428-52063223) | |
| 514-719, gnl|canFam2|chr8 (41479711-41480035) | |
| 514-719, gnl|echTel1|scaffold_310752 (7333-7668) | |
| 514-719, gnl|hg17|chr14 (63533402-63533722) | |
| 514-719, gnl|Hg17|chr14 (63533413-63533618) | |
| 514-719, gnl|loxAfr1|scaffold_157089 (4309-3983) | |
| 514-719, gnl|mm7|chr12 (73883714-73884041) | |
| 514-719, gnl|Mm7|chr12 (73883725-73883930) | |
| 514-719, gnl|monDom2|scaffold_8 (77571127-77571464) | |
| 514-719, gnl|oryCun1|scaffold_157505 (9838-10145) | |
| 514-719, gnl|panTro1|chr15 (63102647-63102967) | |
| 514-719, gnl|rheMac2|chr7 (127017646-127017966) | |
| 514-719, gnl|rn3|chr6 (98535545-98535869) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csk (0.140746) |