Non-Coding RNA Search

Ss1.1-rcsk17_d16.5

Sequence:


               
               TCATAGGAAATTCACTGGAATTGAGCGCAATTGTCTTTGTCGTCTTTTTTTTTTTTTTTT
AAATCTTATTCTGTTGTTGACAGCGTTTGGGTATTTTTTTAGAGGCCTCACGATAAGTTA
TTACCGTCCCCCTCTTTGTTTTTCAAAGACATGTGGTGATATAGTTTTTAAAAATAACTA
TTTTGTTATAGATCATAATATGCATAAAACTGTACAGAAATATTTTGTAATGTATTGATT
TTAAAAAAAAGACGCTGTAAATAAAGTTTAAAAAAAAAAACAAGAGACTTCAAATGGCAC
ACACTGAAAGATGTAGATATTTTGCTATTTATTTAAAGGAGTATTTTAAGAGATACTGAA
CTATCTGAAATTGACCAGTAATCAAAGTTCCAATCATCCCGAGTGCTTTTCCTCGCGGTA
GAATGTGATTCTCGGAAACGATTGCACTACCCGCCCATTTTTGCACCTTTTCTGTCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATAGGAAATTCACTGGAATTGAGCGCAATTGTCTTTGTCGTCTTTTTTTTTTTTTTTT
AAATCTTATTCTGTTGTTGACAGCGTTTGGGTATTTTTTTAGAGGCCTCACGATAAGTTA
TTACCGTCCCCCTCTTTGTTTTTCAAAGACATGTGGTGATATAGTTTTTAAAAATAACTA
TTTTGTTATAGATCATAATATGCATAAAACTGTACAGAAATATTTTGTAATGTATTGATT
TTAAAAAAAAGACGCTGTAAATAAAGTTTAAAAAAAAAAACAAGAGACTTCAAATGGCAC
ACACTGAAAGATGTAGATATTTTGCTATTTATTTAAAGGAGTATTTTAAGAGATACTGAA
CTATCTGAAATTGACCAGTAATCAAAGTTCCAATCATCCCGAGTGCTTTTCCTCGCGGTA
GAATGTGATTCTCGGAAACGATTGCACTACCCGCCCATTTTTGCACCTTTTCTGTCTTTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-480, gnl|bosTau2|chr25 (12350767-12350291)
               

               
               1-480, gnl|Hg17|chr16 (17104377-17103905)
               

               
               1-480, gnl|Mm7|chr7 (113595435-113595929)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-480, gnl|bosTau2|chr25 (12350767-12350291)
               

               
               1-480, gnl|Hg17|chr16 (17104377-17103905)
               

               
               1-480, gnl|Mm7|chr7 (113595435-113595929)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

	1-480, gnl\|bosTau2\|chr25 (12350767-12350291)
	1-480, gnl\|Hg17\|chr16 (17104377-17103905)
	1-480, gnl\|Mm7\|chr7 (113595435-113595929)

	lnt (0.142308)
	csk (0.140746)
	ret (0.128733)
	cly (0.120642)
	eru (0.120048)