Non-Coding RNA Search

Ss1.1-rcsk17_f10.5

Sequence:


               
               CACCGCCCTCCATGTTGCTGCCAGCCTGCAGTATCGGGTGACACAGTTGGATGCAGTCCG
CCTGTTGATGAGGAAGGGAGCAGACCCAAGTACTCGGAACCTGGAGAATGAGCAGCCAGT
GCATTTGGTTCCTGATGGCCCTGTGGGAGAACAGATCCGACGTATCCTGAAGGGAAAGTC
CATTCAGCAGAGAGCTCCACCGTATTAGCTCCATTGACTTGGAGCTGGCAATACTCACTG
TCAGTTAGGCAGTCCTAATGTATCTGTACATAGACCATTTGCTCTGTATTGGCAAATGTA
AGTTGTTTCTATGAAACAAACATATTTAGTTCACTATTATATAGTGGGTTATGTTAAAAG
AAAAGGAGAAAAATATCTAATTCCTCTTGGCAGATTTTAATATTTCATACCCAGGTATCT
GGGATCTAGACATCTGAATTTAATCTGAATGTTAAATTGACTTCAGTTAACAGTAGATTT
TGGGTAGGAAAAGGTTTGATTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCGCCCTCCATGTTGCTGCCAGCCTGCAGTATCGGGTGACACAGTTGGATGCAGTCCG
CCTGTTGATGAGGAAGGGAGCAGACCCAAGTACTCGGAACCTGGAGAATGAGCAGCCAGT
GCATTTGGTTCCTGATGGCCCTGTGGGAGAACAGATCCGACGTATCCTGAAGGGAAAGTC
CATTCAGCAGAGAGCTCCACCGTATTAGCTCCATTGACTTGGAGCTGGCAATACTCACTG
TCAGTTAGGCAGTCCTAATGTATCTGTACATAGACCATTTGCTCTGTATTGGCAAATGTA
AGTTGTTTCTATGAAACAAACATATTTAGTTCACTATTATATAGTGGGTTATGTTAAAAG
AAAAGGAGAAAAATATCTAATTCCTCTTGGCAGATTTTAATATTTCATACCCAGGTATCT
GGGATCTAGACATCTGAATTTAATCTGAATGTTAAATTGACTTCAGTTAACAGTAGATTT
TGGGTAGGAAAAGGTTTGATTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|42716255|gb|AAS37659.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|42716255|gb|AAS37659.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               152-424, - strand, RNAz p=0.990492

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-424, - strand, RNAz p=0.990492

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               152-484, gnl|bosTau2|chr11 (21553401-21553063)
               

               
               152-484, gnl|Hg17|chr3 (103060849-103061197)
               

               
               152-484, gnl|Mm7|chr16 (55653885-55653546)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-484, gnl|bosTau2|chr11 (21553401-21553063)
               

               
               152-484, gnl|Hg17|chr3 (103060849-103061197)
               

               
               152-484, gnl|Mm7|chr16 (55653885-55653546)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cmu (0.186393)
               

               
               duo (0.172801)
               

               
               csk (0.140746)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               duo (0.172801)
               

               
               csk (0.140746)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

	152-484, gnl\|bosTau2\|chr11 (21553401-21553063)
	152-484, gnl\|Hg17\|chr3 (103060849-103061197)
	152-484, gnl\|Mm7\|chr16 (55653885-55653546)

	cmu (0.186393)
	duo (0.172801)
	csk (0.140746)
	clu (0.119646)
	jca (0.11396)