Ss1.1-rcsk17_i5.5
|
GGCAACCAGCTCTTCTTCTGGATTTGGAAAGACGGCTCCACCGCAGCTCCCTTCTTTCTA
CAAACATTGGTTCTAAACGGGCTAACTTTGATGAAGAAAAGTGCATATTTTGAAGATGAG
GAAGAAGATTCTAGCAATGTTGATTTACCTTACATTCCTGCTGAAAACTCACCTACCCGC
CAGCAATTCCATTCCAAGCCAGTTGATTCTGACAGTGATGATGATCCATTAGAGGCATTC
ATGGCTGAAGTGGAGGATCAAGCAGCTAGAGACATGAAGAGGCTTGAAGAAAAGGACAAA
GAAAGAAAAAACGTGAAGGGTATTCGAGATGACATTGAAGAGGAAGATTAGGCTTTTATT
TTATTTTCGGTACCTGGCTGATAATCCAACTGCTGGTGTCGTCCAAAAGGAGGAGGAAGA
TAATTTGGAATATGATAGTGATGGGAATCCAATTGCACCTTCCAAAAA------------
TCTTCCTCCCATTGATCACTCAGAGATTGACTATCCACCATTTGAAAAAAATTTTTACAA
TGAACATGAAGAGATAACCAACCTCACCCCACAGCAGCTAATAGATCTCCGACATAAGCT
CAATCTTCGGGTTTCTGGTGCTGCACCTCCTAGACCAGGAAGTAGTTTTGCTCATTTTGG
GTTTGATGAACAACTGATGCACCAGATTCGGAAATCTGAATACACACAGCCCACCCCAAT
ACAGTGCCAGGGTGTACCTGTGGCGTTAAGTGGTAGAGACATGATTGGTATTGCCAAAAC
AGGCAGTGGAAAAACTGCAGCCTTTATCTGGCCCATGTTGATTTACCTTACATTCCTGCT
GAAAACTCACCTACCCGCCAGCAATTCCATTCCAAGCCAGTTGATTCTGACAGTGATGAT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCAACCAGCTCTTCTTCTGGATTTGGAAAGACGGCTCCACCGCAGCTCCCTTCTTTCTA
CAAACATTGGTTCTAAACGGGCTAACTTTGATGAAGAAAAGTGCATATTTTGAAGATGAG
GAAGAAGATTCTAGCAATGTTGATTTACCTTACATTCCTGCTGAAAACTCACCTACCCGC
CAGCAATTCCATTCCAAGCCAGTTGATTCTGACAGTGATGATGATCCATTAGAGGCATTC
ATGGCTGAAGTGGAGGATCAAGCAGCTAGAGACATGAAGAGGCTTGAAGAAAAGGACAAA
GAAAGAAAAAACGTGAAGGGTATTCGAGATGACATTGAAGAGGAAGATTAGGCTTTTATT
TTATTTTCGGTACCTGGCTGATAATCCAACTGCTGGTGTCGTCCAAAAGGAGGAGGAAGA
TAATTTGGAATATGATAGTGATGGGAATCCAATTGCACCTTCCAAAAA------------
TCTTCCTCCCATTGATCACTCAGAGATTGACTATCCACCATTTGAAAAAAATTTTTACAA
TGAACATGAAGAGATAACCAACCTCACCCCACAGCAGCTAATAGATCTCCGACATAAGCT
CAATCTTCGGGTTTCTGGTGCTGCACCTCCTAGACCAGGAAGTAGTTTTGCTCATTTTGG
GTTTGATGAACAACTGATGCACCAGATTCGGAAATCTGAATACACACAGCCCACCCCAAT
ACAGTGCCAGGGTGTACCTGTGGCGTTAAGTGGTAGAGACATGATTGGTATTGCCAAAAC
AGGCAGTGGAAAAACTGCAGCCTTTATCTGGCCCATGTTGATTTACCTTACATTCCTGCT
GAAAACTCACCTACCCGCCAGCAATTCCATTCCAAGCCAGTTGATTCTGACAGTGATGAT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
105-256, gnl|bosTau2|chr19 (40469186-40469337) |
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105-256, gnl|Hg17|chr17 (59223504-59223655) |
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105-256, gnl|Mm7|chr11 (106333825-106333976) |
| |
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598-719, gnl|bosTau2|chr19 (40481838-40481959) |
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598-719, gnl|canFam2|chr9 (14888797-14888934) |
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598-719, gnl|danRer3|chr3 (28694455-28694579) |
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598-719, gnl|dasNov1|scaffold_112653 (2897-3034) |
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598-719, gnl|fr1|chrUn (140069044-140069171) |
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598-719, gnl|galGal2|chr27 (1265856-1265994) |
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598-719, gnl|hg17|chr17 (59237613-59237750) |
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598-719, gnl|Hg17|chr17 (59237626-59237747) |
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598-719, gnl|loxAfr1|scaffold_4277 (72745-72608) |
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598-719, gnl|mm7|chr11 (106343879-106344016) |
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598-719, gnl|Mm7|chr11 (106343892-106344013) |
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598-719, gnl|monDom2|scaffold_18 (35704115-35703977) |
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598-719, gnl|oryCun1|scaffold_194892 (1111-1248) |
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598-719, gnl|panTro1|chr19 (45898721-45898584) |
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598-719, gnl|rheMac2|chr16 (59318291-59318428) |
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598-719, gnl|rn3|chr10 (95644360-95644497) |
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598-719, gnl|tetNig1|chr3 (13657129-13657266) |
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598-719, gnl|xenTro1|scaffold_221 (1551166-1551025) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
105-256, gnl|bosTau2|chr19 (40469186-40469337) |
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105-256, gnl|Hg17|chr17 (59223504-59223655) |
|
105-256, gnl|Mm7|chr11 (106333825-106333976) |
| |
|
598-719, gnl|bosTau2|chr19 (40481838-40481959) |
|
598-719, gnl|canFam2|chr9 (14888797-14888934) |
|
598-719, gnl|danRer3|chr3 (28694455-28694579) |
|
598-719, gnl|dasNov1|scaffold_112653 (2897-3034) |
|
598-719, gnl|fr1|chrUn (140069044-140069171) |
|
598-719, gnl|galGal2|chr27 (1265856-1265994) |
|
598-719, gnl|hg17|chr17 (59237613-59237750) |
|
598-719, gnl|Hg17|chr17 (59237626-59237747) |
|
598-719, gnl|loxAfr1|scaffold_4277 (72745-72608) |
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598-719, gnl|mm7|chr11 (106343879-106344016) |
|
598-719, gnl|Mm7|chr11 (106343892-106344013) |
|
598-719, gnl|monDom2|scaffold_18 (35704115-35703977) |
|
598-719, gnl|oryCun1|scaffold_194892 (1111-1248) |
|
598-719, gnl|panTro1|chr19 (45898721-45898584) |
|
598-719, gnl|rheMac2|chr16 (59318291-59318428) |
|
598-719, gnl|rn3|chr10 (95644360-95644497) |
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598-719, gnl|tetNig1|chr3 (13657129-13657266) |
|
598-719, gnl|xenTro1|scaffold_221 (1551166-1551025) |
|
csk (0.140746) |
|
jej (0.0989218) |
|
csk (0.140746) |
|
jej (0.0989218) |
